Glyoxylic acid
Everything that changed this flow. Back to the flow
2e9d127f-78bf-46bf-a4c1-63c539db5b01
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 27785' (registry code) |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=298-12-4; cc_chebi_agreed_name='Glyoxylic acid'; object_uuid=fo-00d6a1c26c52f2ce |
| cas_match_labels | 1 | consensus_match | group_key=glyoxylacid||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'298-12-4': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-00d6a1c26c52f2ce: {'298-12-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['298-12-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16891']; candidate_pubchem_cids=[760, 83372, 3614358, 15620607, 43836246]; selected_pubchem_cids=[760]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 10,581 | bootstrap_labels | prefLabel | — | [{"@value":"glyoxyl acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Bootstrapped prefLabel from legacy name field |
| 10,582 | bootstrap_labels | name | glyoxyl acid | — | Purged legacy name field to enforce prefLabel usage |
| 10,583 | bootstrap_labels | synonyms | ["organic","glyoxylicacid","glyoxylicacid50%(aqueoussolution)","glyoxylicacidliq50"] | [] | Removed legacy synonyms field in favor of structured labels |
| 67,668 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 67,669 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 216,849 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,569 | normalize_name_case | prefLabel | [{"@value":"glyoxyl acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"Glyoxyl Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 237,257 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 237,258 | enrich_references | skos_definition | — | [{"@value":"A 2-oxo monocarboxylic acid that is acetic acid bearing an oxo group at the α carbon atom.","@language":"en… | Merged ChEBI/PubChem definitions into skos:definition |
| 237,259 | enrich_references | references | [] | [{"@id":"gmelin:25752","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['298-12-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16891']; candidate_pubchem_cids=[760, 83372, 3614358, 15620607, 43836246]; selected_pubchem_cids=[760]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,207 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | rdkit_pre_consensus from 'C(=O)C(=O)O'; added: monoisotopic_mass |
| 255,878 | chebi_altlabels | altLabel | [] | [{"@value":"GLYOXYLIC ACID","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,455 | consensus_match | prefLabel | [{"@value":"Glyoxyl Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"Glyoxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"… | cas=298-12-4; cc_chebi_agreed_name='Glyoxylic acid'; object_uuid=fo-00d6a1c26c52f2ce |
| 267,456 | consensus_match | altLabel | [{"@value":"GLYOXYLIC ACID","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"Glyoxalate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | cas=298-12-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-00d6a1c26c52f2ce |
| 267,457 | consensus_match | altLabel | [{"@value":"Glyoxalate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"Glyoxalate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | group_key=glyoxylacid||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=298-12-4; added Common Chemistry CAS names as altLabel: 2-Oxoacetic acid, Acetic acid, 2-oxo-, Acetic acid, oxo-, Carboxyformaldehyde, Formylcarboxylic acid, Glyoxalic acid, Glyoxo High Pure 50, NSC 27785, Oxalic semialdehyde, α-Ketoacetic acid; object_uuid=fo-00d6a1c26c52f2ce |
| 267,458 | consensus_match | cas_match_labels | — | {"298-12-4":"exactMatch"} | group_key=glyoxylacid||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'298-12-4': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-00d6a1c26c52f2ce: {'298-12-4': 'exactMatch'} |
| 276,392 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Glyoxylic acid' |
| 282,992 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | rdkit_post_consensus from 'O=CC(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,459 | strip_catalogue_altlabels | altLabel | [{"@value":"Glyoxalate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"Glyoxalate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Removed 1 catalogue altLabel value(s): 'NSC 27785' (registry code) |
| 314,851 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2e9d127f-78bf-… | associations resolved on the elementary layer |
| 390,744 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H2O3"],"… | typed the way the ontology types it |
| 398,498 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/10581 | prefLabel | ef:agent/bootstrap_labels | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v0 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v1 |
| ef:activity/change/20260822T0600486828500000/10582 | name | ef:agent/bootstrap_labels | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v1 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v2 |
| ef:activity/change/20260822T0600486828500000/10583 | synonyms | ef:agent/bootstrap_labels | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v2 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v3 |
| ef:activity/change/20260822T0600486828500000/67668 | context | ef:agent/default_context_mapping | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v3 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v4 |
| ef:activity/change/20260822T0600486828500000/67669 | context_iri | ef:agent/default_context_mapping | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v4 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v5 |
| ef:activity/change/20260822T0600486828500000/216849 | unit_iri | ef:agent/unit_normalization | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v5 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v6 |
| ef:activity/change/20260822T0600486828500000/223569 | prefLabel | ef:agent/normalize_name_case | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v6 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v7 |
| ef:activity/change/20260822T0600486828500000/237257 | properties | ef:agent/enrich_references | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v7 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v8 |
| ef:activity/change/20260822T0600486828500000/237258 | skos_definition | ef:agent/enrich_references | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v8 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v9 |
| ef:activity/change/20260822T0600486828500000/237259 | references | ef:agent/enrich_references | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v9 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v10 |
| ef:activity/change/20260822T0600486828500000/251207 | properties | ef:agent/rdkit_pre_consensus | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v10 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v11 |
| ef:activity/change/20260822T0600486828500000/255878 | altLabel | ef:agent/chebi_altlabels | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v11 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v12 |
| ef:activity/change/20260822T0600486828500000/267455 | prefLabel | ef:agent/consensus_match | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v12 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v13 |
| ef:activity/change/20260822T0600486828500000/267456 | altLabel | ef:agent/consensus_match | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v13 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v14 |
| ef:activity/change/20260822T0600486828500000/267457 | altLabel | ef:agent/consensus_match | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v14 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v15 |
| ef:activity/change/20260822T0600486828500000/267458 | cas_match_labels | ef:agent/consensus_match | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v15 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v16 |
| ef:activity/change/20260822T0600486828500000/276392 | properties | ef:agent/opsin_iupac | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v16 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v17 |
| ef:activity/change/20260822T0600486828500000/282992 | properties | ef:agent/rdkit_post_consensus | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v17 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v18 |
| ef:activity/change/20260822T0600486828500000/289459 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v18 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v19 |
| ef:activity/change/20260822T0600486828500000/314851 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v19 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v20 |
| ef:activity/change/20260822T0600486828500000/390744 | properties | ef:agent/normalise_property_values | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v20 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v21 |
| ef:activity/change/20260822T0600486828500000/398498 | types | ef:agent/link_flows_to_their_substance | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v21 | ef:flow/2e9d127f-78bf-46bf-a4c1-63c539db5b01/v22 |