Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 5 catalogue altLabel value(s): 'MK 803' (grade code), 'MK-803' (grade code), 'ML-530B' (grade code), 'MSD 803' (grade code), 'NSC 633781' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=lovastatin||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'75330-75-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4ea022a76e8d0690: {'75330-75-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['75330-75-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_40303']; candidate_pubchem_cids=[3391, 3962, 53232, 115366, 151177, 245727, 5743067, 6420024, 7048568, 9865943, 12040205, 12923629, 18631864, 46782086, 77906391, 118855436, 129010394, 134695323, 146159674]; selected_pubchem_cids=[53232]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
16,288 bootstrap_labels prefLabel [{"@value":"lovastatin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
16,289 bootstrap_labels name lovastatin Purged legacy name field to enforce prefLabel usage
16,290 bootstrap_labels synonyms ["(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-Hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-yl)ethyl)-1… [] Removed legacy synonyms field in favor of structured labels
76,222 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
76,223 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
218,686 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,831 normalize_name_case prefLabel [{"@value":"lovastatin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Lovastatin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
242,502 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
242,503 enrich_references skos_definition [{"@value":"A fatty acid ester that is mevastatin carrying an additional methyl group on the carbobicyclic skeleton. It… Merged ChEBI/PubChem definitions into skos:definition
242,504 enrich_references references [] [{"@id":"beilstein:3631989","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['75330-75-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_40303']; candidate_pubchem_cids=[3391, 3962, 53232, 115366, 151177, 245727, 5743067, 6420024, 7048568, 9865943, 12040205, 12923629, 18631864, 46782086, 77906391, 118855436, 129010394, 134695323, 146159674]; selected_pubchem_cids=[53232]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,736 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… rdkit_pre_consensus from 'CCC(C)C(=O)OC1CC(C=C2C1C(C(C=C2)C)CCC3CC(CC(=O)O3)O)C'; added: inchi2d_string, monoisotopic_mass
256,536 chebi_altlabels altLabel [] [{"@value":"(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-y… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,428 consensus_match altLabel [{"@value":"(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-y… [{"@value":"(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-y… group_key=lovastatin||dimension=Environmental > media=Ground > geography=Unknown; cas=75330-75-5; added Common Chemistry CAS names as altLabel: (+)-Mevinolin, 6α-Methylcompactin, Altocor, Altoprev, Antibiotic MB 530B, Butanoic acid, 2-methyl-, (1<em>S</em>,3<em>R</em>,7<em>S</em>,8<em>S</em>,8a<em>R</em>)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-[2-[(2<em>R</em>,4<em>R</em>)-tetrahydro-4-hydroxy-6-oxo-2<em>H</em>-pyran-2-yl]ethyl]-1-naphthalenyl ester, (2<em>S</em>)-, Butanoic acid, 2-methyl-, 1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-[2-(tetrahydro-4-hydroxy-6-oxo-2<em>H</em>-pyran-2-yl)ethyl]-1-naphthalenyl ester, [1<em>S</em>-[1α(<em>R</em>*),3α,7β,8β(2<em>S</em>*,4<em>S</em>*),8aβ]]-, L 154803, Lestric, Lostatin, Lovacard, Lovalip, Lovastatin lactone, Lovex, MK 803, MSD 803, MeSH ID: D008148, Mevinacor, Mevlor, Monacolin K, Monacolin K lactone, NSC 633781, Sivlor; object_uuid=fo-4ea022a76e8d0690
268,429 consensus_match cas_match_labels {"75330-75-5":"exactMatch"} group_key=lovastatin||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'75330-75-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4ea022a76e8d0690: {'75330-75-5': 'exactMatch'}
277,942 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-yl)ethyl)-1-naphthalenyl (S)-2-methyl-butyrate'
284,658 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… rdkit_post_consensus from 'CC[C@H](C)C(=O)O[C@H]1C[C@@H](C)C=C2C=C[C@H](C)[C@H](CC[C@@H]3C[C@@H](O)CC(=O)O3)[C@H]21'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,558 strip_catalogue_altlabels altLabel [{"@value":"(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-y… [{"@value":"(1S,3R,7S,8S,8aR)-1,2,3,7,8,8a-hexahydro-3,7-dimethyl-8-(2-(2R,4R)-(tetrahydro-4-hydroxy-6-oxo-2H-pyran-2-y… Removed 5 catalogue altLabel value(s): 'MK 803' (grade code), 'MK-803' (grade code), 'ML-530B' (grade code), 'MSD 803' (grade code), 'NSC 633781' (registry code)
319,126 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/3bf6a4ab-8608-… associations resolved on the elementary layer
392,293 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… typed the way the ontology types it
400,686 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
400,687 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H36O5"]… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/16288 prefLabel ef:agent/bootstrap_labels ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v0 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v1
ef:activity/change/20260822T0600486828500000/16289 name ef:agent/bootstrap_labels ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v1 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v2
ef:activity/change/20260822T0600486828500000/16290 synonyms ef:agent/bootstrap_labels ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v2 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v3
ef:activity/change/20260822T0600486828500000/76222 context ef:agent/default_context_mapping ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v3 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v4
ef:activity/change/20260822T0600486828500000/76223 context_iri ef:agent/default_context_mapping ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v4 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v5
ef:activity/change/20260822T0600486828500000/218686 unit_iri ef:agent/unit_normalization ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v5 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v6
ef:activity/change/20260822T0600486828500000/224831 prefLabel ef:agent/normalize_name_case ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v6 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v7
ef:activity/change/20260822T0600486828500000/242502 properties ef:agent/enrich_references ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v7 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v8
ef:activity/change/20260822T0600486828500000/242503 skos_definition ef:agent/enrich_references ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v8 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v9
ef:activity/change/20260822T0600486828500000/242504 references ef:agent/enrich_references ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v9 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v10
ef:activity/change/20260822T0600486828500000/252736 properties ef:agent/rdkit_pre_consensus ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v10 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v11
ef:activity/change/20260822T0600486828500000/256536 altLabel ef:agent/chebi_altlabels ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v11 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v12
ef:activity/change/20260822T0600486828500000/268428 altLabel ef:agent/consensus_match ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v12 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v13
ef:activity/change/20260822T0600486828500000/268429 cas_match_labels ef:agent/consensus_match ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v13 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v14
ef:activity/change/20260822T0600486828500000/277942 properties ef:agent/opsin_iupac ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v14 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v15
ef:activity/change/20260822T0600486828500000/284658 properties ef:agent/rdkit_post_consensus ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v15 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v16
ef:activity/change/20260822T0600486828500000/290558 altLabel ef:agent/strip_catalogue_altlabels ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v16 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v17
ef:activity/change/20260822T0600486828500000/319126 concept_associations ef:agent/carry_associations_onto_flows ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v17 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v18
ef:activity/change/20260822T0600486828500000/392293 properties ef:agent/normalise_property_values ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v18 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v19
ef:activity/change/20260822T0600486828500000/400686 types ef:agent/link_flows_to_their_substance ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v19 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v20
ef:activity/change/20260822T0600486828500000/400687 properties ef:agent/link_flows_to_their_substance ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v20 ef:flow/3bf6a4ab-8608-43a1-b9e3-9cab7ea35088/v21

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