Consensus flow list

By field

16 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'ZA 1296' (grade code)
cas_match_labels 1 consensus_match group_key=mesotrione(iso);2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1,3-cyclohexanedione||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'104206-82-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0b3a00e30cf0514b: {'104206-82-8': 'exactMatch'}
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
dcterms_is_replaced_by 1 pipeline.deduplication duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
is_replaced_by_uuid 1 pipeline.deduplication duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
owl_deprecated 1 pipeline.deduplication duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['104206-82-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38321']; candidate_pubchem_cids=[175967, 184292, 22648329]; selected_pubchem_cids=[175967]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
21,612 bootstrap_labels prefLabel [{"@value":"Mesotrione","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
21,613 bootstrap_labels name Mesotrione Purged legacy name field to enforce prefLabel usage
21,614 bootstrap_labels synonyms ["2-(4-mesyl-2-nitrobenzoyl)cyclohexane-1,3-dione"] [] Removed legacy synonyms field in favor of structured labels
77,306 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
77,307 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
219,046 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
243,502 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
243,503 enrich_references skos_definition [{"@value":"An aromatic ketone that is cyclohexa-1,3-dione in which one of the hydrogens at position 2 is substituted b… Merged ChEBI/PubChem definitions into skos:definition
243,504 enrich_references references [] [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J1.031.035K","provenance":{"prov:wasGeneratedBy":"enrich_refer… Added references with provenance; cas_numbers=['104206-82-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38321']; candidate_pubchem_cids=[175967, 184292, 22648329]; selected_pubchem_cids=[175967]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,025 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… rdkit_pre_consensus from 'CS(=O)(=O)C1=CC(=C(C=C1)C(=O)C2C(=O)CCCC2=O)[N+](=O)[O-]'; added: monoisotopic_mass
256,673 chebi_altlabels altLabel [] [{"@value":"(2-nitro-4-(methylsullfonyl))benzoylcyclohexane-1,3-dione","@language":"en","source":{"prov:wasGeneratedBy"… Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,613 consensus_match altLabel [{"@value":"(2-nitro-4-(methylsullfonyl))benzoylcyclohexane-1,3-dione","@language":"en","source":{"prov:wasGeneratedBy"… [{"@value":"(2-nitro-4-(methylsullfonyl))benzoylcyclohexane-1,3-dione","@language":"en","source":{"prov:wasGeneratedBy"… group_key=mesotrione(iso);2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1,3-cyclohexanedione||dimension=Environmental > media=Water > water_body=Unknown; cas=104206-82-8; added Common Chemistry CAS names as altLabel: 1,3-Cyclohexanedione, 2-[4-(methylsulfonyl)-2-nitrobenzoyl]-, Calisto, Callisto, Tenacity (herbicide), Xiaohuangcaotong, ZA 1296; object_uuid=fo-0b3a00e30cf0514b
268,614 consensus_match cas_match_labels {"104206-82-8":"exactMatch"} group_key=mesotrione(iso);2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1,3-cyclohexanedione||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'104206-82-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0b3a00e30cf0514b: {'104206-82-8': 'exactMatch'}
278,242 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '2-(2'-nitro-4'-methylsulfonylbenzoyl)cyclohexane-1,3-dione'
284,986 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… rdkit_post_consensus from 'CS(=O)(=O)c1ccc(C(=O)C2C(=O)CCCC2=O)c([N+](=O)[O-])c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,512 strip_catalogue_altlabels altLabel [{"@value":"(2-nitro-4-(methylsullfonyl))benzoylcyclohexane-1,3-dione","@language":"en","source":{"prov:wasGeneratedBy"… [{"@value":"(2-nitro-4-(methylsullfonyl))benzoylcyclohexane-1,3-dione","@language":"en","source":{"prov:wasGeneratedBy"… Removed 1 catalogue altLabel value(s): 'ZA 1296' (grade code)
293,665 pipeline.deduplication owl_deprecated yes duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
293,666 pipeline.deduplication dcterms_is_replaced_by urn:uuid:aa74fbea-4268-423c-ab40-41b2d38aa56c duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
293,667 pipeline.deduplication is_replaced_by_uuid aa74fbea-4268-423c-ab40-41b2d38aa56c duplicate of aa74fbea-4268-423c-ab40-41b2d38aa56c
392,597 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H13NO7S… typed the way the ontology types it
401,137 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
401,138 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/21612 prefLabel ef:agent/bootstrap_labels ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v0 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v1
ef:activity/change/20260820T1416470405690000/21613 name ef:agent/bootstrap_labels ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v1 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v2
ef:activity/change/20260820T1416470405690000/21614 synonyms ef:agent/bootstrap_labels ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v2 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v3
ef:activity/change/20260820T1416470405690000/77306 context ef:agent/default_context_mapping ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v3 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v4
ef:activity/change/20260820T1416470405690000/77307 context_iri ef:agent/default_context_mapping ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v4 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v5
ef:activity/change/20260820T1416470405690000/219046 unit_iri ef:agent/unit_normalization ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v5 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v6
ef:activity/change/20260820T1416470405690000/243502 properties ef:agent/enrich_references ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v6 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v7
ef:activity/change/20260820T1416470405690000/243503 skos_definition ef:agent/enrich_references ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v7 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v8
ef:activity/change/20260820T1416470405690000/243504 references ef:agent/enrich_references ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v8 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v9
ef:activity/change/20260820T1416470405690000/253025 properties ef:agent/rdkit_pre_consensus ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v9 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v10
ef:activity/change/20260820T1416470405690000/256673 altLabel ef:agent/chebi_altlabels ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v10 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v11
ef:activity/change/20260820T1416470405690000/268613 altLabel ef:agent/consensus_match ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v11 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v12
ef:activity/change/20260820T1416470405690000/268614 cas_match_labels ef:agent/consensus_match ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v12 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v13
ef:activity/change/20260820T1416470405690000/278242 properties ef:agent/opsin_iupac ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v13 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v14
ef:activity/change/20260820T1416470405690000/284986 properties ef:agent/rdkit_post_consensus ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v14 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v15
ef:activity/change/20260820T1416470405690000/291512 altLabel ef:agent/strip_catalogue_altlabels ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v15 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v16
ef:activity/change/20260820T1416470405690000/293665 owl_deprecated ef:agent/pipeline.deduplication ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v16 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v17
ef:activity/change/20260820T1416470405690000/293666 dcterms_is_replaced_by ef:agent/pipeline.deduplication ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v17 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v18
ef:activity/change/20260820T1416470405690000/293667 is_replaced_by_uuid ef:agent/pipeline.deduplication ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v18 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v19
ef:activity/change/20260820T1416470405690000/392597 properties ef:agent/normalise_property_values ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v19 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v20
ef:activity/change/20260820T1416470405690000/401137 types ef:agent/link_flows_to_their_substance ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v20 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v21
ef:activity/change/20260820T1416470405690000/401138 roles ef:agent/link_flows_to_their_substance ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v21 ef:flow/3dc8a060-4300-40da-b077-0197680e7a55/v22

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