Xenon
Everything that changed this flow. Back to the flow
3e4d9eac-6556-11dd-ad8b-0800200c9a66
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Xenon |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=xenon||dimension=Resource > media=Air; cas=7440-63-3; added Common Chemistry CAS names as altLabel: MeSH ID: D014978, NBXT 001 TBD; object_uuid=fo-75d0bb2fbd316341 |
| cas_match_labels | 1 | consensus_match | group_key=xenon||dimension=Resource > media=Air; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-63-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-75d0bb2fbd316341: {'7440-63-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from air > Renewable element resources from air |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from air > Renewable element resources from air |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-172-7 from CAS 7440-63-3 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-63-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49956', 'http://purl.obolibrary.org/obo/CHEBI_49957']; candidate_pubchem_cids=[23991]; selected_pubchem_cids=[23991]; formula_similarity_expected=['Xe']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 21,844 | bootstrap_labels | prefLabel | — | [{"@value":"xenon","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Bootstrapped prefLabel from legacy name field |
| 21,845 | bootstrap_labels | name | xenon | — | Purged legacy name field to enforce prefLabel usage |
| 21,846 | bootstrap_labels | synonyms | ["(135xe)xenon","AC1L2N4V","KST-1A2126","OR8483","XE","Xenon (JAN)","Xenopure","Xenopure (TN)","[Xe]","xenon atom","xen… | [] | Removed legacy synonyms field in favor of structured labels |
| 78,484 | default_context_mapping | context | — | {"dimension":"Resource","media":"Air"} | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from air > Renewable element resources from air |
| 78,485 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/reso-air | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from air > Renewable element resources from air |
| 220,339 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,040 | normalize_name_case | prefLabel | [{"@value":"xenon","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | [{"@value":"Xenon","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,070 | ec_cross_check | ec_numbers | [] | ["231-172-7"] | Resolved from EC-inventory: 231-172-7 from CAS 7440-63-3 |
| 247,099 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 247,100 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 247,101 | enrich_references | references | [] | [{"@id":"gmelin:16318","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['7440-63-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49956', 'http://purl.obolibrary.org/obo/CHEBI_49957']; candidate_pubchem_cids=[23991]; selected_pubchem_cids=[23991]; formula_similarity_expected=['Xe']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,067 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | rdkit_pre_consensus from '[Xe]'; added: monoisotopic_mass |
| 257,156 | chebi_altlabels | altLabel | [] | [{"@value":"54Xe","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 5 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 273,296 | consensus_match | altLabel | [{"@value":"54Xe","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"54Xe","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=xenon||dimension=Resource > media=Air; cas=7440-63-3; added Common Chemistry CAS names as altLabel: MeSH ID: D014978, NBXT 001 TBD; object_uuid=fo-75d0bb2fbd316341 |
| 273,297 | consensus_match | cas_match_labels | — | {"7440-63-3":"exactMatch"} | group_key=xenon||dimension=Resource > media=Air; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-63-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-75d0bb2fbd316341: {'7440-63-3': 'exactMatch'} |
| 279,283 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Xenon' |
| 286,148 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | rdkit_post_consensus from '[Xe]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 320,276 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/3e4d9eac-6556-… | associations resolved on the elementary layer |
| 393,676 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | typed the way the ontology types it |
| 402,793 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 402,794 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Xe"],"atte… | the substance's answer, copied onto its flow |
| 403,859 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Xenon","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | [{"@value":"Xenon","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichmen… | element name from the flow object: Xenon |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/21844 | prefLabel | ef:agent/bootstrap_labels | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260820T0738569779880000/21845 | name | ef:agent/bootstrap_labels | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260820T0738569779880000/21846 | synonyms | ef:agent/bootstrap_labels | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260820T0738569779880000/78484 | context | ef:agent/default_context_mapping | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260820T0738569779880000/78485 | context_iri | ef:agent/default_context_mapping | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260820T0738569779880000/220339 | unit_iri | ef:agent/unit_normalization | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260820T0738569779880000/226040 | prefLabel | ef:agent/normalize_name_case | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260820T0738569779880000/227070 | ec_numbers | ef:agent/ec_cross_check | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260820T0738569779880000/247099 | properties | ef:agent/enrich_references | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260820T0738569779880000/247100 | skos_definition | ef:agent/enrich_references | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260820T0738569779880000/247101 | references | ef:agent/enrich_references | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260820T0738569779880000/254067 | properties | ef:agent/rdkit_pre_consensus | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260820T0738569779880000/257156 | altLabel | ef:agent/chebi_altlabels | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260820T0738569779880000/273296 | altLabel | ef:agent/consensus_match | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260820T0738569779880000/273297 | cas_match_labels | ef:agent/consensus_match | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260820T0738569779880000/279283 | properties | ef:agent/opsin_iupac | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260820T0738569779880000/286148 | properties | ef:agent/rdkit_post_consensus | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260820T0738569779880000/320276 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260820T0738569779880000/393676 | properties | ef:agent/normalise_property_values | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260820T0738569779880000/402793 | types | ef:agent/link_flows_to_their_substance | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260820T0738569779880000/402794 | properties | ef:agent/link_flows_to_their_substance | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260820T0738569779880000/403859 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/3e4d9eac-6556-11dd-ad8b-0800200c9a66/v22 |