Nickel(2+)
Everything that changed this flow. Back to the flow
41e90548-2125-4f20-a437-ca5d083fec53
By field
12 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, normalize_name_case, substance_label_v1 | the substance's name: Nickel(2+) |
| cas_match_labels | 1 | consensus_match | group_key=nickel(ii)||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'14701-22-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-68c3d37c7952fd0f: {'14701-22-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['14701-22-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49786']; candidate_pubchem_cids=[934, 84479]; selected_pubchem_cids=[934]; formula_similarity_expected=['Ni']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 5,499 | bootstrap_labels | prefLabel | — | [{"@value":"nickel (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 5,500 | bootstrap_labels | name | nickel (ii) | — | Purged legacy name field to enforce prefLabel usage |
| 80,610 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 80,611 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 215,181 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,375 | normalize_name_case | prefLabel | [{"@value":"nickel (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Nickel (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 232,474 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 232,475 | enrich_references | skos_definition | — | [{"@value":"A nickel cation in which the nickel carries a double positive charge.","@language":"en","provenance":{"prov… | Merged ChEBI/PubChem definitions into skos:definition |
| 232,476 | enrich_references | references | [] | [{"@id":"gmelin:6859","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['14701-22-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49786']; candidate_pubchem_cids=[934, 84479]; selected_pubchem_cids=[934]; formula_similarity_expected=['Ni']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,842 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | rdkit_pre_consensus from '[Ni+2]'; added: monoisotopic_mass |
| 255,078 | chebi_altlabels | altLabel | [] | [{"@value":"NICKEL (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 269,840 | consensus_match | altLabel | [{"@value":"NICKEL (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"NICKEL (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=nickel(ii)||dimension=Environmental > media=Water > water_body=Long-term; cas=14701-22-5; added Common Chemistry CAS names as altLabel: Nickel cation (Ni<sup>2+</sup>), Nickel dication, Nickel ion(2+), Nickel(II), Nickel(II) ion; object_uuid=fo-68c3d37c7952fd0f |
| 269,841 | consensus_match | cas_match_labels | — | {"14701-22-5":"exactMatch"} | group_key=nickel(ii)||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'14701-22-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-68c3d37c7952fd0f: {'14701-22-5': 'exactMatch'} |
| 274,998 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Nickel (ii)' |
| 281,478 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | rdkit_post_consensus from '[Ni+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,293 | dedupe_altlabels | altLabel | [{"@value":"NICKEL (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"NICKEL (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Deduplicated altLabel values and removed entries matching prefLabel |
| 321,340 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/41e90548-2125-… | associations resolved on the elementary layer |
| 389,306 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | typed the way the ontology types it |
| 396,385 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 396,386 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ni","Ni+2"… | the substance's answer, copied onto its flow |
| 403,892 | substance_label_v1 | prefLabel | [{"@value":"Nickel (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Nickel(2+)","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAtt… | the substance's name: Nickel(2+) |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1555490862250000/5499 | prefLabel | ef:agent/bootstrap_labels | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v0 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v1 |
| ef:activity/change/20260820T1555490862250000/5500 | name | ef:agent/bootstrap_labels | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v1 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v2 |
| ef:activity/change/20260820T1555490862250000/80610 | context | ef:agent/default_context_mapping | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v2 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v3 |
| ef:activity/change/20260820T1555490862250000/80611 | context_iri | ef:agent/default_context_mapping | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v3 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v4 |
| ef:activity/change/20260820T1555490862250000/215181 | unit_iri | ef:agent/unit_normalization | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v4 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v5 |
| ef:activity/change/20260820T1555490862250000/222375 | prefLabel | ef:agent/normalize_name_case | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v5 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v6 |
| ef:activity/change/20260820T1555490862250000/232474 | properties | ef:agent/enrich_references | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v6 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v7 |
| ef:activity/change/20260820T1555490862250000/232475 | skos_definition | ef:agent/enrich_references | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v7 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v8 |
| ef:activity/change/20260820T1555490862250000/232476 | references | ef:agent/enrich_references | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v8 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v9 |
| ef:activity/change/20260820T1555490862250000/249842 | properties | ef:agent/rdkit_pre_consensus | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v9 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v10 |
| ef:activity/change/20260820T1555490862250000/255078 | altLabel | ef:agent/chebi_altlabels | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v10 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v11 |
| ef:activity/change/20260820T1555490862250000/269840 | altLabel | ef:agent/consensus_match | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v11 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v12 |
| ef:activity/change/20260820T1555490862250000/269841 | cas_match_labels | ef:agent/consensus_match | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v12 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v13 |
| ef:activity/change/20260820T1555490862250000/274998 | properties | ef:agent/opsin_iupac | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v13 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v14 |
| ef:activity/change/20260820T1555490862250000/281478 | properties | ef:agent/rdkit_post_consensus | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v14 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v15 |
| ef:activity/change/20260820T1555490862250000/292293 | altLabel | ef:agent/dedupe_altlabels | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v15 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v16 |
| ef:activity/change/20260820T1555490862250000/321340 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v16 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v17 |
| ef:activity/change/20260820T1555490862250000/389306 | properties | ef:agent/normalise_property_values | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v17 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v18 |
| ef:activity/change/20260820T1555490862250000/396385 | types | ef:agent/link_flows_to_their_substance | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v18 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v19 |
| ef:activity/change/20260820T1555490862250000/396386 | properties | ef:agent/link_flows_to_their_substance | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v19 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v20 |
| ef:activity/change/20260820T1555490862250000/403892 | prefLabel | ef:agent/substance_label_v1 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v20 | ef:flow/41e90548-2125-4f20-a437-ca5d083fec53/v21 |