hydrogencarbonate
Everything that changed this flow. Back to the flow
43c04b88-e980-4e20-9ee4-64919e6dad03
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; relationship_class=exact_match; candidate_name=hydrogencarbonate; cas=71-52-3; sources=['chebi', 'common_chemistry', 'pubchem']; reason=normalized names match; object_uuid=fo-f00dec7f76499f7b |
| cas_match_labels | 1 | consensus_match | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'pubchem']; cas_sources={'71-52-3': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f00dec7f76499f7b: {'71-52-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['71-52-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17544']; candidate_pubchem_cids=[767, 769]; selected_pubchem_cids=[769]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 22,121 | bootstrap_labels | prefLabel | — | [{"@value":"Hydrogen carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | Bootstrapped prefLabel from legacy name field |
| 22,122 | bootstrap_labels | name | Hydrogen carbonate | — | Purged legacy name field to enforce prefLabel usage |
| 22,123 | bootstrap_labels | synonyms | ["hydrogen carbonate","bicarbonate ion"] | [] | Removed legacy synonyms field in favor of structured labels |
| 81,632 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 81,633 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 220,399 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,084 | normalize_name_case | prefLabel | [{"@value":"Hydrogen carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | [{"@value":"Hydrogen Carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 247,269 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 247,270 | enrich_references | skos_definition | — | [{"@value":"The carbon oxoanion resulting from the removal of a proton from carbonic acid.","@language":"en","provenanc… | Merged ChEBI/PubChem definitions into skos:definition |
| 247,271 | enrich_references | references | [] | [{"@id":"beilstein:3903504","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['71-52-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17544']; candidate_pubchem_cids=[767, 769]; selected_pubchem_cids=[769]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,112 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | rdkit_pre_consensus from 'C(=O)(O)[O-]'; added: monoisotopic_mass |
| 257,171 | chebi_altlabels | altLabel | [] | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,865 | consensus_match | prefLabel | [{"@value":"Hydrogen Carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | [{"@value":"hydrogencarbonate","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo… | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; relationship_class=exact_match; candidate_name=hydrogencarbonate; cas=71-52-3; sources=['chebi', 'common_chemistry', 'pubchem']; reason=normalized names match; object_uuid=fo-f00dec7f76499f7b |
| 267,866 | consensus_match | altLabel | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; cas=71-52-3; added current EF name as altLabel when prefLabel differs; object_uuid=fo-f00dec7f76499f7b |
| 267,867 | consensus_match | altLabel | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; cas=71-52-3; added Common Chemistry CAS names as altLabel: Bicarbonate (HCO<sub>3</sub><sup>-</sup>), Bicarbonate anion, Bicarbonate ion (HCO<sub>3</sub><sup>1-</sup>), Carbonate (HCO<sub>3</sub><sup>1-</sup>), Carbonate ion (HCO<sub>3</sub><sup>1-</sup>), Carbonate, hydrogen, Carbonic acid, ion(1-), Hydrocarbonate(1-), Hydrogen carbonate (HCO<sub>3</sub><sup>-</sup>), Hydrogen carbonate anion, Hydrogen carbonate ion, Hydrogen carbonate ion (HCO<sub>3</sub><sup>-</sup>), Monohydrogen carbonate; object_uuid=fo-f00dec7f76499f7b |
| 267,868 | consensus_match | cas_match_labels | — | {"71-52-3":"exactMatch"} | group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'pubchem']; cas_sources={'71-52-3': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f00dec7f76499f7b: {'71-52-3': 'exactMatch'} |
| 279,314 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'hydrogencarbonate' |
| 286,185 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | rdkit_post_consensus from 'O=C([O-])O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,159 | dedupe_altlabels | altLabel | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Deduplicated altLabel values and removed entries matching prefLabel |
| 321,830 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/43c04b88-e980-… | associations resolved on the elementary layer |
| 393,705 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… | typed the way the ontology types it |
| 402,850 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/22121 | prefLabel | ef:agent/bootstrap_labels | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v0 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v1 |
| ef:activity/change/20260822T0600486828500000/22122 | name | ef:agent/bootstrap_labels | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v1 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v2 |
| ef:activity/change/20260822T0600486828500000/22123 | synonyms | ef:agent/bootstrap_labels | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v2 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v3 |
| ef:activity/change/20260822T0600486828500000/81632 | context | ef:agent/default_context_mapping | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v3 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v4 |
| ef:activity/change/20260822T0600486828500000/81633 | context_iri | ef:agent/default_context_mapping | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v4 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v5 |
| ef:activity/change/20260822T0600486828500000/220399 | unit_iri | ef:agent/unit_normalization | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v5 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v6 |
| ef:activity/change/20260822T0600486828500000/226084 | prefLabel | ef:agent/normalize_name_case | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v6 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v7 |
| ef:activity/change/20260822T0600486828500000/247269 | properties | ef:agent/enrich_references | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v7 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v8 |
| ef:activity/change/20260822T0600486828500000/247270 | skos_definition | ef:agent/enrich_references | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v8 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v9 |
| ef:activity/change/20260822T0600486828500000/247271 | references | ef:agent/enrich_references | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v9 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v10 |
| ef:activity/change/20260822T0600486828500000/254112 | properties | ef:agent/rdkit_pre_consensus | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v10 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v11 |
| ef:activity/change/20260822T0600486828500000/257171 | altLabel | ef:agent/chebi_altlabels | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v11 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v12 |
| ef:activity/change/20260822T0600486828500000/267865 | prefLabel | ef:agent/consensus_match | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v12 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v13 |
| ef:activity/change/20260822T0600486828500000/267866 | altLabel | ef:agent/consensus_match | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v13 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v14 |
| ef:activity/change/20260822T0600486828500000/267867 | altLabel | ef:agent/consensus_match | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v14 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v15 |
| ef:activity/change/20260822T0600486828500000/267868 | cas_match_labels | ef:agent/consensus_match | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v15 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v16 |
| ef:activity/change/20260822T0600486828500000/279314 | properties | ef:agent/opsin_iupac | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v16 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v17 |
| ef:activity/change/20260822T0600486828500000/286185 | properties | ef:agent/rdkit_post_consensus | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v17 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v18 |
| ef:activity/change/20260822T0600486828500000/293159 | altLabel | ef:agent/dedupe_altlabels | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v18 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v19 |
| ef:activity/change/20260822T0600486828500000/321830 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v19 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v20 |
| ef:activity/change/20260822T0600486828500000/393705 | properties | ef:agent/normalise_property_values | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v20 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v21 |
| ef:activity/change/20260822T0600486828500000/402850 | types | ef:agent/link_flows_to_their_substance | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v21 | ef:flow/43c04b88-e980-4e20-9ee4-64919e6dad03/v22 |