5-chlorouracil
Everything that changed this flow. Back to the flow
455b96f5-8ba2-4547-a96e-2e3417f8352a
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 28172' (registry code) |
| cas_match_labels | 1 | consensus_match | group_key=5-chlorouracil||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1820-81-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bfde4a2d4597d649: {'1820-81-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['1820-81-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_60762']; candidate_pubchem_cids=[15758, 17139006]; selected_pubchem_cids=[15758]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
19| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,725 | bootstrap_labels | prefLabel | — | [{"@value":"5-chlorouracil","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 19,726 | bootstrap_labels | name | 5-chlorouracil | — | Purged legacy name field to enforce prefLabel usage |
| 22,175 | bootstrap_labels | synonyms | ["5-chlorouracil","5-chloro-1,2,3,4-tetrahydropyrimidine-2,4-dione","2,4(1H,3H)-Pyrimidinedione, 5-chloro-","5-Chloro-1… | [] | Removed legacy synonyms field in favor of structured labels |
| 82,572 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 82,573 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 219,752 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 245,488 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,489 | enrich_references | skos_definition | — | [{"@value":"An organochlorine compound consisting of uracil having an chloro substituent at the 5-position.","@language… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,490 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J49.053I","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['1820-81-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_60762']; candidate_pubchem_cids=[15758, 17139006]; selected_pubchem_cids=[15758]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,595 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | rdkit_pre_consensus from 'C1=C(C(=O)NC(=O)N1)Cl'; added: monoisotopic_mass |
| 256,945 | chebi_altlabels | altLabel | [] | [{"@value":"5-chloropyrimidine-2,4(1H,3H)-dione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | Added 1 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,074 | consensus_match | altLabel | [{"@value":"5-chloropyrimidine-2,4(1H,3H)-dione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"5-chloropyrimidine-2,4(1H,3H)-dione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | group_key=5-chlorouracil||dimension=Environmental > media=Ground > geography=Agricultural; cas=1820-81-1; added Common Chemistry CAS names as altLabel: 2,4(1<em>H</em>,3<em>H</em>)-Pyrimidinedione, 5-chloro-, 5-Chloro-2,4(1<em>H</em>,3<em>H</em>)-pyrimidinedione, 5-Chloro-2,4-dihydroxypyrimidine, 5-Chloro-2,4-pyrimidinedione, 5-Chloropyrimidine-2,4-diol, NSC 28172, Uracil, 5-chloro-; object_uuid=fo-bfde4a2d4597d649 |
| 263,075 | consensus_match | cas_match_labels | — | {"1820-81-1":"exactMatch"} | group_key=5-chlorouracil||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1820-81-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bfde4a2d4597d649: {'1820-81-1': 'exactMatch'} |
| 278,811 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-chlorouracil' |
| 285,605 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | rdkit_post_consensus from 'O=c1[nH]cc(Cl)c(=O)[nH]1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,203 | strip_catalogue_altlabels | altLabel | [{"@value":"5-chloropyrimidine-2,4(1H,3H)-dione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"5-chloropyrimidine-2,4(1H,3H)-dione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | Removed 1 catalogue altLabel value(s): 'NSC 28172' (registry code) |
| 322,300 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/455b96f5-8ba2-… | associations resolved on the elementary layer |
| 393,183 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3ClN2O2… | typed the way the ontology types it |
| 402,022 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
19 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/19725 | prefLabel | ef:agent/bootstrap_labels | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v0 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v1 |
| ef:activity/change/20260821T1554374006150000/19726 | name | ef:agent/bootstrap_labels | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v1 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v2 |
| ef:activity/change/20260821T1554374006150000/22175 | synonyms | ef:agent/bootstrap_labels | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v2 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v3 |
| ef:activity/change/20260821T1554374006150000/82572 | context | ef:agent/default_context_mapping | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v3 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v4 |
| ef:activity/change/20260821T1554374006150000/82573 | context_iri | ef:agent/default_context_mapping | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v4 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v5 |
| ef:activity/change/20260821T1554374006150000/219752 | unit_iri | ef:agent/unit_normalization | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v5 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v6 |
| ef:activity/change/20260821T1554374006150000/245488 | properties | ef:agent/enrich_references | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v6 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v7 |
| ef:activity/change/20260821T1554374006150000/245489 | skos_definition | ef:agent/enrich_references | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v7 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v8 |
| ef:activity/change/20260821T1554374006150000/245490 | references | ef:agent/enrich_references | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v8 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v9 |
| ef:activity/change/20260821T1554374006150000/253595 | properties | ef:agent/rdkit_pre_consensus | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v9 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v10 |
| ef:activity/change/20260821T1554374006150000/256945 | altLabel | ef:agent/chebi_altlabels | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v10 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v11 |
| ef:activity/change/20260821T1554374006150000/263074 | altLabel | ef:agent/consensus_match | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v11 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v12 |
| ef:activity/change/20260821T1554374006150000/263075 | cas_match_labels | ef:agent/consensus_match | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v12 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v13 |
| ef:activity/change/20260821T1554374006150000/278811 | properties | ef:agent/opsin_iupac | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v13 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v14 |
| ef:activity/change/20260821T1554374006150000/285605 | properties | ef:agent/rdkit_post_consensus | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v14 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v15 |
| ef:activity/change/20260821T1554374006150000/291203 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v15 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v16 |
| ef:activity/change/20260821T1554374006150000/322300 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v16 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v17 |
| ef:activity/change/20260821T1554374006150000/393183 | properties | ef:agent/normalise_property_values | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v17 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v18 |
| ef:activity/change/20260821T1554374006150000/402022 | types | ef:agent/link_flows_to_their_substance | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v18 | ef:flow/455b96f5-8ba2-4547-a96e-2e3417f8352a/v19 |