L-alanine
Everything that changed this flow. Back to the flow
4619a5b4-8647-476f-a2a0-1069c71ef22b
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 206315' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=l-alanine||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-da2e7e1d381874e1: {'56-41-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['56-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16977']; candidate_pubchem_cids=[602, 5950, 7311724, 16213584]; selected_pubchem_cids=[5950]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,490 | bootstrap_labels | prefLabel | — | [{"@value":"l-alanine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 12,491 | bootstrap_labels | name | l-alanine | — | Purged legacy name field to enforce prefLabel usage |
| 12,492 | bootstrap_labels | synonyms | ["organic","l-alanine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 83,020 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 83,021 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 217,472 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,985 | normalize_name_case | prefLabel | [{"@value":"l-alanine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"L-alanine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 239,045 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 239,046 | enrich_references | skos_definition | — | [{"@value":"The L-enantiomer of alanine.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi… | Merged ChEBI/PubChem definitions into skos:definition |
| 239,047 | enrich_references | references | [] | [{"@id":"drugcentral:4255","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['56-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16977']; candidate_pubchem_cids=[602, 5950, 7311724, 16213584]; selected_pubchem_cids=[5950]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,727 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | rdkit_pre_consensus from 'CC(C(=O)O)N'; added: inchi2d_string, monoisotopic_mass |
| 256,099 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-aminopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,279 | consensus_match | altLabel | [{"@value":"(2S)-2-aminopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"(2S)-2-aminopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=l-alanine||dimension=Environmental > media=Water > water_body=Unknown; cas=56-41-7; added Common Chemistry CAS names as altLabel: (2S)-2-Azaniumylpropanoate, (<em>S</em>)-(+)-Alanine, 12: PN: WO2022187968 SEQID: 12 claimed protein, 2-Aminopropionic acid, 334: PN: WO2025117649 SEQID: 343 sequence, 364: PN: US20220128567 SEQID: 535 claimed protein, 364: PN: US20220178935 SEQID: 535 claimed protein, 519: PN: WO2022056313 SEQID: 535 claimed protein, 533: PN: WO2023172654 SEQID: 535 claimed sequence, 8: PN: WO2021055880 SEQID: 9 claimed protein, <span class="text-smallcaps">L</span>-(+)-Alanine, <span class="text-smallcaps">L</span>-2-Aminopropanoic acid, <span class="text-smallcaps">L</span>-α-Alanine, <span class="text-smallcaps">L</span>-α-Aminopropionic acid, Alanine, <span class="text-smallcaps">L</span>-, Lactamine, MeSH ID: D000409, NSC 206315, Propanoic acid, 2-amino-, (<em>S</em>)-, α-Alanine, α-Aminopropionic acid; object_uuid=fo-da2e7e1d381874e1 |
| 268,280 | consensus_match | cas_match_labels | — | {"56-41-7":"exactMatch"} | group_key=l-alanine||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-da2e7e1d381874e1: {'56-41-7': 'exactMatch'} |
| 276,914 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-alanine' |
| 283,562 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | rdkit_post_consensus from 'C[C@H](N)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,828 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S)-2-aminopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"(2S)-2-aminopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 1 catalogue altLabel value(s): 'NSC 206315' (registry code) |
| 322,524 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4619a5b4-8647-… | associations resolved on the elementary layer |
| 391,272 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | typed the way the ontology types it |
| 399,232 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,233 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2"],… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/12490 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v0 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v1 |
| ef:activity/change/20260822T0600486828500000/12491 | name | ef:agent/bootstrap_labels | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v1 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v2 |
| ef:activity/change/20260822T0600486828500000/12492 | synonyms | ef:agent/bootstrap_labels | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v2 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v3 |
| ef:activity/change/20260822T0600486828500000/83020 | context | ef:agent/default_context_mapping | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v3 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v4 |
| ef:activity/change/20260822T0600486828500000/83021 | context_iri | ef:agent/default_context_mapping | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v4 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v5 |
| ef:activity/change/20260822T0600486828500000/217472 | unit_iri | ef:agent/unit_normalization | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v5 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v6 |
| ef:activity/change/20260822T0600486828500000/223985 | prefLabel | ef:agent/normalize_name_case | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v6 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v7 |
| ef:activity/change/20260822T0600486828500000/239045 | properties | ef:agent/enrich_references | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v7 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v8 |
| ef:activity/change/20260822T0600486828500000/239046 | skos_definition | ef:agent/enrich_references | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v8 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v9 |
| ef:activity/change/20260822T0600486828500000/239047 | references | ef:agent/enrich_references | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v9 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v10 |
| ef:activity/change/20260822T0600486828500000/251727 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v10 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v11 |
| ef:activity/change/20260822T0600486828500000/256099 | altLabel | ef:agent/chebi_altlabels | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v11 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v12 |
| ef:activity/change/20260822T0600486828500000/268279 | altLabel | ef:agent/consensus_match | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v12 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v13 |
| ef:activity/change/20260822T0600486828500000/268280 | cas_match_labels | ef:agent/consensus_match | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v13 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v14 |
| ef:activity/change/20260822T0600486828500000/276914 | properties | ef:agent/opsin_iupac | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v14 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v15 |
| ef:activity/change/20260822T0600486828500000/283562 | properties | ef:agent/rdkit_post_consensus | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v15 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v16 |
| ef:activity/change/20260822T0600486828500000/289828 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v16 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v17 |
| ef:activity/change/20260822T0600486828500000/322524 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v17 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v18 |
| ef:activity/change/20260822T0600486828500000/391272 | properties | ef:agent/normalise_property_values | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v18 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v19 |
| ef:activity/change/20260822T0600486828500000/399232 | types | ef:agent/link_flows_to_their_substance | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v19 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v20 |
| ef:activity/change/20260822T0600486828500000/399233 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v20 | ef:flow/4619a5b4-8647-476f-a2a0-1069c71ef22b/v21 |