Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
cas_match_labels 1 consensus_match group_key=(4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory']; cas_sources={'5989-54-8': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-a7c5510e913ea95e: {'5989-54-8': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['5989-54-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15383']; candidate_pubchem_cids=[22311, 439250]; selected_pubchem_cids=[439250]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
20,360 bootstrap_labels prefLabel [{"@value":"(4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_… Bootstrapped prefLabel from legacy name field
20,361 bootstrap_labels name (4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene Purged legacy name field to enforce prefLabel usage
20,362 bootstrap_labels synonyms ["organic","(s)-p-mentha-1,8-diene","l-limonene"] [] Removed legacy synonyms field in favor of structured labels
86,298 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
86,299 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
219,939 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
246,004 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
246,005 enrich_references skos_definition [{"@value":"An optically active form of limonene having (4S)-configuration.","@language":"en","provenance":{"prov:wasGe… Merged ChEBI/PubChem definitions into skos:definition
246,006 enrich_references references [] [{"@id":"beilstein:2323991","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['5989-54-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15383']; candidate_pubchem_cids=[22311, 439250]; selected_pubchem_cids=[439250]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,750 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_pre_consensus from 'CC1=CCC(CC1)C(=C)C'; added: inchi2d_string, monoisotopic_mass
257,005 chebi_altlabels altLabel [] [{"@value":"(-)-(4S)-Limonene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… Added 14 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
257,783 consensus_match altLabel [{"@value":"(-)-(4S)-Limonene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… [{"@value":"(-)-(4S)-Limonene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… group_key=(4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=5989-54-8; added Common Chemistry CAS names as altLabel: (-)-α-Limonene, (4<em>S</em>)-1-Methyl-4-(1-methylethenyl)cyclohexene, (<em>S</em>)-(-)-Limonene, (<em>S</em>)-1-Methyl-4-(prop-1-en-2-yl)cyclohex-1-ene, (<em>S</em>)-4-Isopropenyl-1-methyl-1-cyclohexene, (<em>S</em>)-Limonene, <em>p</em>-Mentha-1,8-diene, (<em>S</em>)-(-)-, Cyclohexene, 1-methyl-4-(1-methylethenyl)-, (4<em>S</em>)-, Cyclohexene, 1-methyl-4-(1-methylethenyl)-, (<em>S</em>)-, l-Carvene, β-Limonene; object_uuid=fo-a7c5510e913ea95e
257,784 consensus_match cas_match_labels {"5989-54-8":"exactMatch"} group_key=(4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory']; cas_sources={'5989-54-8': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-a7c5510e913ea95e: {'5989-54-8': 'exactMatch'}
278,970 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(4s)-(-)-1-methyl-4-prop-1-en-2-ylcyclohexene'
285,786 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_post_consensus from 'C=C(C)[C@@H]1CC=C(C)CC1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
293,105 dedupe_altlabels altLabel [{"@value":"(-)-(4S)-Limonene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… [{"@value":"(-)-(4S)-Limonene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… Deduplicated altLabel values and removed entries matching prefLabel
324,185 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4bfe3865-7573-… associations resolved on the elementary layer
393,352 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… typed the way the ontology types it
402,260 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
402,261 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/20360 prefLabel ef:agent/bootstrap_labels ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v0 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v1
ef:activity/change/20260820T0738569779880000/20361 name ef:agent/bootstrap_labels ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v1 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v2
ef:activity/change/20260820T0738569779880000/20362 synonyms ef:agent/bootstrap_labels ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v2 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v3
ef:activity/change/20260820T0738569779880000/86298 context ef:agent/default_context_mapping ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v3 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v4
ef:activity/change/20260820T0738569779880000/86299 context_iri ef:agent/default_context_mapping ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v4 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v5
ef:activity/change/20260820T0738569779880000/219939 unit_iri ef:agent/unit_normalization ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v5 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v6
ef:activity/change/20260820T0738569779880000/246004 properties ef:agent/enrich_references ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v6 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v7
ef:activity/change/20260820T0738569779880000/246005 skos_definition ef:agent/enrich_references ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v7 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v8
ef:activity/change/20260820T0738569779880000/246006 references ef:agent/enrich_references ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v8 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v9
ef:activity/change/20260820T0738569779880000/253750 properties ef:agent/rdkit_pre_consensus ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v9 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v10
ef:activity/change/20260820T0738569779880000/257005 altLabel ef:agent/chebi_altlabels ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v10 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v11
ef:activity/change/20260820T0738569779880000/257783 altLabel ef:agent/consensus_match ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v11 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v12
ef:activity/change/20260820T0738569779880000/257784 cas_match_labels ef:agent/consensus_match ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v12 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v13
ef:activity/change/20260820T0738569779880000/278970 properties ef:agent/opsin_iupac ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v13 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v14
ef:activity/change/20260820T0738569779880000/285786 properties ef:agent/rdkit_post_consensus ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v14 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v15
ef:activity/change/20260820T0738569779880000/293105 altLabel ef:agent/dedupe_altlabels ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v15 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v16
ef:activity/change/20260820T0738569779880000/324185 concept_associations ef:agent/carry_associations_onto_flows ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v16 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v17
ef:activity/change/20260820T0738569779880000/393352 properties ef:agent/normalise_property_values ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v17 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v18
ef:activity/change/20260820T0738569779880000/402260 types ef:agent/link_flows_to_their_substance ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v18 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v19
ef:activity/change/20260820T0738569779880000/402261 properties ef:agent/link_flows_to_their_substance ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v19 ef:flow/4bfe3865-7573-4ce2-983d-283da7eddb02/v20

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