Hematoxylin
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-8d29-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 270085' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=hematoxylin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'517-28-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-43e74ca545fc17dc: {'517-28-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 208-237-3 from CAS 517-28-2 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['517-28-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_5601']; candidate_pubchem_cids=[10603, 15036, 293215, 320930, 442514, 15559608, 15559692, 45029742, 71306855, 91872921, 146159084]; selected_pubchem_cids=[442514]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 11,609 | bootstrap_labels | prefLabel | — | [{"@value":"hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 11,610 | bootstrap_labels | name | hematoxylin | — | Purged legacy name field to enforce prefLabel usage |
| 11,611 | bootstrap_labels | synonyms | ["7,11b-Dihydro-indeno[2,1-c]chromene-3,4,6a,9,10-pentaol","7,11b-Dihydroindeno(2,1-c)chromene-3,4,6a,9,10(6H)-pentol",… | [] | Removed legacy synonyms field in favor of structured labels |
| 87,616 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 87,617 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 217,189 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,790 | normalize_name_case | prefLabel | [{"@value":"hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 226,937 | ec_cross_check | ec_numbers | [] | ["208-237-3"] | Resolved from EC-inventory: 208-237-3 from CAS 517-28-2 |
| 238,230 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,231 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 238,232 | enrich_references | references | [] | [{"@id":"beilstein:1688573","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['517-28-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_5601']; candidate_pubchem_cids=[10603, 15036, 293215, 320930, 442514, 15559608, 15559692, 45029742, 71306855, 91872921, 146159084]; selected_pubchem_cids=[442514]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,492 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | rdkit_pre_consensus from 'C1C2=CC(=C(C=C2C3C1(COC4=C3C=CC(=C4O)O)O)O)O'; added: inchi2d_string, monoisotopic_mass |
| 255,985 | chebi_altlabels | altLabel | [] | [{"@value":"(+)-hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,561 | consensus_match | altLabel | [{"@value":"(+)-hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"(+)-hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=hematoxylin||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=517-28-2; added Common Chemistry CAS names as altLabel: (6AS,11bR)-7,11b-dihydro-6<em>H</em>-indeno[2,1-<em>c</em>]chromene-3,4,6a,9,10-pentol, Benz[<em>b</em>]indeno[1,2-<em>d</em>]pyran-3,4,6a,9,10(6<em>H</em>)-pentol, 7,11b-dihydro-, Benz[<em>b</em>]indeno[1,2-<em>d</em>]pyran-3,4,6a,9,10(6<em>H</em>)-pentol, 7,11b-dihydro-, (6a<em>S</em>,11b<em>R</em>)-, Benz[<em>b</em>]indeno[1,2-<em>d</em>]pyran-3,4,6a,9,10(6<em>H</em>)-pentol, 7,11b-dihydro-, (6a<em>S</em>-<em>cis</em>)-, Hematoxyline, MeSH ID: D006416, NSC 270085; object_uuid=fo-43e74ca545fc17dc |
| 267,562 | consensus_match | cas_match_labels | — | {"517-28-2":"exactMatch"} | group_key=hematoxylin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'517-28-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-43e74ca545fc17dc: {'517-28-2': 'exactMatch'} |
| 276,673 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(6aS,11bR)-7,11b-dihydrobenz[b]indeno[1,2-d]pyran-3,4,6a,9,10(6H)-pentol' |
| 283,300 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | rdkit_post_consensus from 'Oc1cc2c(cc1O)[C@@H]1c3ccc(O)c(O)c3OC[C@]1(O)C2'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,647 | strip_catalogue_altlabels | altLabel | [{"@value":"(+)-hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"(+)-hematoxylin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Removed 1 catalogue altLabel value(s): 'NSC 270085' (registry code) |
| 324,824 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 391,027 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | typed the way the ontology types it |
| 398,892 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 398,893 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H14O6"]… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/11609 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v1 |
| ef:activity/change/20260822T0600486828500000/11610 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v2 |
| ef:activity/change/20260822T0600486828500000/11611 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v3 |
| ef:activity/change/20260822T0600486828500000/87616 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v4 |
| ef:activity/change/20260822T0600486828500000/87617 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v5 |
| ef:activity/change/20260822T0600486828500000/217189 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v6 |
| ef:activity/change/20260822T0600486828500000/223790 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v7 |
| ef:activity/change/20260822T0600486828500000/226937 | ec_numbers | ef:agent/ec_cross_check | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v8 |
| ef:activity/change/20260822T0600486828500000/238230 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v9 |
| ef:activity/change/20260822T0600486828500000/238231 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v10 |
| ef:activity/change/20260822T0600486828500000/238232 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v11 |
| ef:activity/change/20260822T0600486828500000/251492 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v12 |
| ef:activity/change/20260822T0600486828500000/255985 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v13 |
| ef:activity/change/20260822T0600486828500000/267561 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v14 |
| ef:activity/change/20260822T0600486828500000/267562 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v15 |
| ef:activity/change/20260822T0600486828500000/276673 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v16 |
| ef:activity/change/20260822T0600486828500000/283300 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v17 |
| ef:activity/change/20260822T0600486828500000/289647 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v18 |
| ef:activity/change/20260822T0600486828500000/324824 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v19 |
| ef:activity/change/20260822T0600486828500000/391027 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v20 |
| ef:activity/change/20260822T0600486828500000/398892 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v20 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v21 |
| ef:activity/change/20260822T0600486828500000/398893 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v21 | ef:flow/4d9a8790-3ddd-11dd-8d29-0050c2490048/v22 |