Sulfide
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9069-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=sulfide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'18496-25-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-1ee126fd64965f89: {'18496-25-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['18496-25-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15138']; candidate_pubchem_cids=[29109]; selected_pubchem_cids=[29109]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 21,637 | bootstrap_labels | prefLabel | — | [{"@value":"sulfide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 21,638 | bootstrap_labels | name | sulfide | — | Purged legacy name field to enforce prefLabel usage |
| 21,639 | bootstrap_labels | synonyms | ["AC1L1GRM","CPD-7046","S(2-)","S2-","Sulfur (2-)","Sulphur (2-)","sulfanediide","sulfide(2-)","sulfur(2-)","sulphide"] | [] | Removed legacy synonyms field in favor of structured labels |
| 89,262 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 89,263 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 220,269 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,980 | normalize_name_case | prefLabel | [{"@value":"sulfide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Sulfide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,908 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,909 | enrich_references | skos_definition | — | [{"@value":"A divalent inorganic anion obtained by removal of both protons from hydrogen sulfide.","@language":"en","pr… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,910 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J3.760.928E","provenance":{"prov:wasGeneratedBy":"enrich_refer… | Added references with provenance; cas_numbers=['18496-25-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15138']; candidate_pubchem_cids=[29109]; selected_pubchem_cids=[29109]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,009 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | rdkit_pre_consensus from '[S-2]'; added: monoisotopic_mass |
| 257,109 | chebi_altlabels | altLabel | [] | [{"@value":"S(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,168 | consensus_match | altLabel | [{"@value":"S(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"S(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | group_key=sulfide||dimension=Environmental > media=Ground > geography=Agricultural; cas=18496-25-8; added Common Chemistry CAS names as altLabel: Sulfide (S<sup>2-</sup>), Sulfide ion, Sulfide ion (S<sup>2-</sup>), Sulfide ion(2-), Sulfur(2-), Sulfur, ion (S<sup>2-</sup>); object_uuid=fo-1ee126fd64965f89 |
| 272,169 | consensus_match | cas_match_labels | — | {"18496-25-8":"exactMatch"} | group_key=sulfide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'18496-25-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-1ee126fd64965f89: {'18496-25-8': 'exactMatch'} |
| 279,207 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'sulfanediide' |
| 286,064 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | rdkit_post_consensus from '[S-2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,134 | dedupe_altlabels | altLabel | [{"@value":"S(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"S(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Deduplicated altLabel values and removed entries matching prefLabel |
| 325,643 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 393,593 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["S","S-2"],… | typed the way the ontology types it |
| 402,670 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1302361922970000/21637 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v1 |
| ef:activity/change/20260821T1302361922970000/21638 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v2 |
| ef:activity/change/20260821T1302361922970000/21639 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v3 |
| ef:activity/change/20260821T1302361922970000/89262 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v4 |
| ef:activity/change/20260821T1302361922970000/89263 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v5 |
| ef:activity/change/20260821T1302361922970000/220269 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v6 |
| ef:activity/change/20260821T1302361922970000/225980 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v7 |
| ef:activity/change/20260821T1302361922970000/246908 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v8 |
| ef:activity/change/20260821T1302361922970000/246909 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v9 |
| ef:activity/change/20260821T1302361922970000/246910 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v10 |
| ef:activity/change/20260821T1302361922970000/254009 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v11 |
| ef:activity/change/20260821T1302361922970000/257109 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v12 |
| ef:activity/change/20260821T1302361922970000/272168 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v13 |
| ef:activity/change/20260821T1302361922970000/272169 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v14 |
| ef:activity/change/20260821T1302361922970000/279207 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v15 |
| ef:activity/change/20260821T1302361922970000/286064 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v16 |
| ef:activity/change/20260821T1302361922970000/293134 | altLabel | ef:agent/dedupe_altlabels | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v17 |
| ef:activity/change/20260821T1302361922970000/325643 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v18 |
| ef:activity/change/20260821T1302361922970000/393593 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v19 |
| ef:activity/change/20260821T1302361922970000/402670 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9069-0050c2490048/v20 |