Phorate
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9826-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'American Cyanamid 3911' (trade name), 'Experimental Insecticide 3911' (trade name) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=phorate||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'298-02-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5ce7942095f7e191: {'298-02-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['298-02-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38764']; candidate_pubchem_cids=[4790]; selected_pubchem_cids=[4790]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 3,554 | bootstrap_labels | prefLabel | — | [{"@value":"phorate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 3,555 | bootstrap_labels | name | phorate | — | Purged legacy name field to enforce prefLabel usage |
| 3,556 | bootstrap_labels | synonyms | ["AC 3911","AC1L1IYN","Agrimet","American cyanamid 3,911","Dithiophosphate de O,O-diethyle et D'ethylthiomethyle","EI39… | [] | Removed legacy synonyms field in favor of structured labels |
| 93,180 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 93,181 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 214,531 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,924 | normalize_name_case | prefLabel | [{"@value":"phorate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Phorate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 230,617 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 230,618 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 230,619 | enrich_references | references | [] | [{"@id":"beilstein:1708517","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['298-02-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38764']; candidate_pubchem_cids=[4790]; selected_pubchem_cids=[4790]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,312 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | rdkit_pre_consensus from 'CCOP(=S)(OCC)SCSCC'; added: monoisotopic_mass |
| 254,833 | chebi_altlabels | altLabel | [] | [{"@value":"O,O-Diethyl S-(ethylthio)methyl phosphorodithioate","@language":"en","source":{"prov:wasGeneratedBy":"chebi… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,679 | consensus_match | altLabel | [{"@value":"O,O-Diethyl S-(ethylthio)methyl phosphorodithioate","@language":"en","source":{"prov:wasGeneratedBy":"chebi… | [{"@value":"O,O-Diethyl S-(ethylthio)methyl phosphorodithioate","@language":"en","source":{"prov:wasGeneratedBy":"chebi… | group_key=phorate||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=298-02-2; added Common Chemistry CAS names as altLabel: <em>O</em>,<em>O</em>-Diethyl <em>S</em>-[(ethylthio)methyl] phosphorodithioate, <em>O</em>,<em>O</em>-Diethyl <em>S</em>-ethylthiomethyl dithiophosphate, American Cyanamid 3911, ENT 24,042, Experimental Insecticide 3911, Foratox, Granutox, L 11/6, MeSH ID: D010702, Phorate 10G, Phosphorodithioic acid, <em>O</em>,<em>O</em>-diethyl <em>S</em>-[(ethylthio)methyl] ester, Thimet 10G, Thimet G, Timet, VUAgT 182, suScon FuMing; object_uuid=fo-5ce7942095f7e191 |
| 270,680 | consensus_match | cas_match_labels | — | {"298-02-2":"exactMatch"} | group_key=phorate||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'298-02-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5ce7942095f7e191: {'298-02-2': 'exactMatch'} |
| 274,460 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'O,O-Diethyl S-(ethylthio)methyl phosphorodithioate' |
| 280,892 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | rdkit_post_consensus from 'CCOP(=S)(OCC)SCSCC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,004 | strip_catalogue_altlabels | altLabel | [{"@value":"O,O-Diethyl S-(ethylthio)methyl phosphorodithioate","@language":"en","source":{"prov:wasGeneratedBy":"chebi… | [{"@value":"O,O-Diethyl S-(ethylthio)methyl phosphorodithioate","@language":"en","source":{"prov:wasGeneratedBy":"chebi… | Removed 2 catalogue altLabel value(s): 'American Cyanamid 3911' (trade name), 'Experimental Insecticide 3911' (trade name) |
| 327,616 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 388,753 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H17O2PS3… | typed the way the ontology types it |
| 395,601 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 395,602 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/3554 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v1 |
| ef:activity/change/20260820T0738569779880000/3555 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v2 |
| ef:activity/change/20260820T0738569779880000/3556 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v3 |
| ef:activity/change/20260820T0738569779880000/93180 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v4 |
| ef:activity/change/20260820T0738569779880000/93181 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v5 |
| ef:activity/change/20260820T0738569779880000/214531 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v6 |
| ef:activity/change/20260820T0738569779880000/221924 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v7 |
| ef:activity/change/20260820T0738569779880000/230617 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v8 |
| ef:activity/change/20260820T0738569779880000/230618 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v9 |
| ef:activity/change/20260820T0738569779880000/230619 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v10 |
| ef:activity/change/20260820T0738569779880000/249312 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v11 |
| ef:activity/change/20260820T0738569779880000/254833 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v12 |
| ef:activity/change/20260820T0738569779880000/270679 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v13 |
| ef:activity/change/20260820T0738569779880000/270680 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v14 |
| ef:activity/change/20260820T0738569779880000/274460 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v15 |
| ef:activity/change/20260820T0738569779880000/280892 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v16 |
| ef:activity/change/20260820T0738569779880000/288004 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v17 |
| ef:activity/change/20260820T0738569779880000/327616 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v18 |
| ef:activity/change/20260820T0738569779880000/388753 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v19 |
| ef:activity/change/20260820T0738569779880000/395601 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v20 |
| ef:activity/change/20260820T0738569779880000/395602 | roles | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v20 | ef:flow/4d9a8790-3ddd-11dd-9826-0050c2490048/v21 |