Pyrene
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9a3a-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 4 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NSC 17534' (registry code), 'NSC 66449' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=pyrene||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'129-00-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7fe4dd62be85e8f2: {'129-00-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['129-00-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39106']; candidate_pubchem_cids=[31423, 34327]; selected_pubchem_cids=[31423]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 3,343 | bootstrap_labels | prefLabel | — | [{"@value":"pyrene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 3,344 | bootstrap_labels | name | pyrene | — | Purged legacy name field to enforce prefLabel usage |
| 3,345 | bootstrap_labels | synonyms | [".beta.-Pyrene","AB-131/40897138","AB1003795","AC1L1LL8","AC1Q1HAT","AKOS000269680","Benzo(def)phenanthrene","Benzo[de… | [] | Removed legacy synonyms field in favor of structured labels |
| 94,226 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 94,227 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 214,455 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,858 | normalize_name_case | prefLabel | [{"@value":"pyrene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Pyrene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 230,399 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 230,400 | enrich_references | skos_definition | — | [{"@value":"An ortho- and peri-fused polycyclic arene consisting of four fused benzene rings, resulting in a flat aroma… | Merged ChEBI/PubChem definitions into skos:definition |
| 230,401 | enrich_references | references | [] | [{"@id":"beilstein:1307225","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['129-00-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39106']; candidate_pubchem_cids=[31423, 34327]; selected_pubchem_cids=[31423]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,778 | chebi_altlabels | altLabel | [] | [{"@value":"Pyren","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 271,186 | consensus_match | altLabel | [{"@value":"Pyren","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Pyren","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | group_key=pyrene||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=129-00-0; added Common Chemistry CAS names as altLabel: NSC 17534, NSC 66449; object_uuid=fo-7fe4dd62be85e8f2 |
| 271,187 | consensus_match | cas_match_labels | — | {"129-00-0":"exactMatch"} | group_key=pyrene||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'129-00-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7fe4dd62be85e8f2: {'129-00-0': 'exactMatch'} |
| 274,367 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Pyrene' |
| 280,802 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | rdkit_post_consensus from 'c1cc2ccc3cccc4ccc(c1)c2c34'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,924 | strip_catalogue_altlabels | altLabel | [{"@value":"Pyren","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Pyren","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Removed 2 catalogue altLabel value(s): 'NSC 17534' (registry code), 'NSC 66449' (registry code) |
| 328,115 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 388,663 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H10"],"… | typed the way the ontology types it |
| 395,490 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 395,491 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/3343 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v1 |
| ef:activity/change/20260821T1554374006150000/3344 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v2 |
| ef:activity/change/20260821T1554374006150000/3345 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v3 |
| ef:activity/change/20260821T1554374006150000/94226 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v4 |
| ef:activity/change/20260821T1554374006150000/94227 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v5 |
| ef:activity/change/20260821T1554374006150000/214455 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v6 |
| ef:activity/change/20260821T1554374006150000/221858 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v7 |
| ef:activity/change/20260821T1554374006150000/230399 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v8 |
| ef:activity/change/20260821T1554374006150000/230400 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v9 |
| ef:activity/change/20260821T1554374006150000/230401 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v10 |
| ef:activity/change/20260821T1554374006150000/254778 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v11 |
| ef:activity/change/20260821T1554374006150000/271186 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v12 |
| ef:activity/change/20260821T1554374006150000/271187 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v13 |
| ef:activity/change/20260821T1554374006150000/274367 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v14 |
| ef:activity/change/20260821T1554374006150000/280802 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v15 |
| ef:activity/change/20260821T1554374006150000/287924 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v16 |
| ef:activity/change/20260821T1554374006150000/328115 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v17 |
| ef:activity/change/20260821T1554374006150000/388663 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v18 |
| ef:activity/change/20260821T1554374006150000/395490 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v19 |
| ef:activity/change/20260821T1554374006150000/395491 | roles | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9a3a-0050c2490048/v20 |