Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 3 catalogue altLabel value(s): 'ENT 50146' (grade code), 'NSC 237659' (registry code), 'NSC 59272' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=resperine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-55-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5230ee76ad8e8b67: {'50-55-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['50-55-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28487']; candidate_pubchem_cids=[5052, 5770, 5326170, 5701996, 6419447, 11888075, 17750878, 118855415, 122173193]; selected_pubchem_cids=[5770]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
22,764 bootstrap_labels prefLabel [{"@value":"resperine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Bootstrapped prefLabel from legacy name field
22,765 bootstrap_labels name resperine Purged legacy name field to enforce prefLabel usage
22,766 bootstrap_labels synonyms ["(-)-Reserpine","(3beta,16beta,17alpha,18beta,20alpha)-11,17-dimethoxy-18-[(3,4,5-trimethoxybenzoyl)oxy]yohimban-16- c… [] Removed legacy synonyms field in favor of structured labels
94,420 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
94,421 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
220,554 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,206 normalize_name_case prefLabel [{"@value":"resperine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… [{"@value":"Resperine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
247,660 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
247,661 enrich_references skos_definition [{"@value":"An alkaloid found in the roots of Rauwolfia serpentina and R. vomitoria.","@language":"en","provenance":{"p… Merged ChEBI/PubChem definitions into skos:definition
247,662 enrich_references references [] [{"@id":"beilstein:5326088","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['50-55-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28487']; candidate_pubchem_cids=[5052, 5770, 5326170, 5701996, 6419447, 11888075, 17750878, 118855415, 122173193]; selected_pubchem_cids=[5770]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,226 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… rdkit_pre_consensus from 'COC1C(CC2CN3CCC4=C(C3CC2C1C(=O)OC)NC5=C4C=CC(=C5)OC)OC(=O)C6=CC(=C(C(=C6)OC)OC)OC'; added: inchi2d_string, monoisotopic_mass
257,259 chebi_altlabels altLabel [] [{"@value":"(-)-reserpine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,474 consensus_match altLabel [{"@value":"(-)-reserpine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… [{"@value":"(-)-reserpine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… group_key=resperine||dimension=Environmental > media=Ground > geography=Agricultural; cas=50-55-5; added Common Chemistry CAS names as altLabel: 11,17-Dimethoxy-18-[(3,4,5-trimethoxybenzoyl)oxy]yohimban-16-carboxylic acid methyl ester, 3β,20α-Yohimban-16β-carboxylic acid, 18β-hydroxy-11,17α-dimethoxy- methyl ester 3,4,5-trimethoxybenzoate (ester), 3β,20α-Yohimban-16β-carboxylic acid, 18β-hydroxy-11,17α-dimethoxy-, methyl ester, 3,4,5-trimethoxybenzoate, <em>T</em>-Serp, Anquil, Banasil, Benz[<em>g</em>]indolo[2,3-<em>a</em>]quinolizine, yohimban-16-carboxylic acid deriv., Bioserpine, Carpacil, Crystoserpine, Deserpine, ENT 50146, Elserpine, Eserpine, Eskaserp, Hiposerpil, Kitine, Lemiserp, Loweserp, Mayserpine, MeSH ID: D012110, Methyl (1S,2R,3R,4aS,13bR,14aS)-2,11-dimethoxy-3-[(3,4,5-trimethoxybenzoyl)oxy]-1,2,3,4,4a,5,7,8,13,13b,14,14a-dodecahydroindolo[2′,3′:3,4]pyrido[1,2-<em>b</em>]isoquinoline-1-carboxylate, Methyl reserpate 3,4,5-trimethoxybenzoate (ester), NSC 237659, NSC 59272, Quiescin, Rau-sed, Raucap, Raulen, Raunervil, Raupasil, Raurine, Rausedil, Rausedyl, Rausingle, Rauwasedin, Resercaps, Resercen, Reserlor, Reserpamed, Reserpex, Reserpic acid methyl ester 3,4,5-trimethoxybenzoate (ester), Reserpil, Reserpoid, Resine, Respital, Restran, Riserpa, Rivasin, Roxinoid, Sandril, Sedaraupin, Sedserp, Serfin, Serolfia, Serp-AFD, Serpaloid, Serpanray, Serpasil, Serpasil Serpasol, Serpasil premix, Serpasol, Serpate, Serpen, Serpentina, Serpicon, Serpiloid, Serpine, Serpine (pharmaceutical), Serpipur, Sertabs, Sertina, Temposerpine, Triserpin, Vio-Serpine, Yohimban-16-carboxylic acid, 11,17-dimethoxy-18-[(3,4,5-trimethoxybenzoyl)oxy]-, methyl ester, (3β,16β,17α,18β,20α)-; object_uuid=fo-5230ee76ad8e8b67
271,475 consensus_match cas_match_labels {"50-55-5":"exactMatch"} group_key=resperine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-55-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5230ee76ad8e8b67: {'50-55-5': 'exactMatch'}
279,451 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Methyl (1S,2R,3R,4aS,13bR,14aS)-2,11-dimethoxy-3-[(3,4,5-trimethoxybenzoyl)oxy]-1,2,3,4,4a,5,7,8,13,13b,14,14a-dodecahydroindolo[2′,3′:3,4]pyrido[1,2-b]isoquinoline-1-carboxylate'
286,327 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… rdkit_post_consensus from 'COC(=O)[C@H]1[C@H]2C[C@@H]3c4[nH]c5cc(OC)ccc5c4CCN3C[C@H]2C[C@@H](OC(=O)c2cc(OC)c(OC)c(OC)c2)[C@@H]1OC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,675 strip_catalogue_altlabels altLabel [{"@value":"(-)-reserpine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… [{"@value":"(-)-reserpine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… Removed 3 catalogue altLabel value(s): 'ENT 50146' (grade code), 'NSC 237659' (registry code), 'NSC 59272' (registry code)
328,212 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… associations resolved on the elementary layer
393,844 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… typed the way the ontology types it
403,042 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
403,043 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… the substance's answer, copied onto its flow
403,044 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C33H40N2O9… the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/22764 prefLabel ef:agent/bootstrap_labels ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v0 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v1
ef:activity/change/20260821T1554374006150000/22765 name ef:agent/bootstrap_labels ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v1 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v2
ef:activity/change/20260821T1554374006150000/22766 synonyms ef:agent/bootstrap_labels ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v2 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v3
ef:activity/change/20260821T1554374006150000/94420 context ef:agent/default_context_mapping ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v3 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v4
ef:activity/change/20260821T1554374006150000/94421 context_iri ef:agent/default_context_mapping ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v4 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v5
ef:activity/change/20260821T1554374006150000/220554 unit_iri ef:agent/unit_normalization ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v5 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v6
ef:activity/change/20260821T1554374006150000/226206 prefLabel ef:agent/normalize_name_case ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v6 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v7
ef:activity/change/20260821T1554374006150000/247660 properties ef:agent/enrich_references ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v7 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v8
ef:activity/change/20260821T1554374006150000/247661 skos_definition ef:agent/enrich_references ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v8 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v9
ef:activity/change/20260821T1554374006150000/247662 references ef:agent/enrich_references ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v9 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v10
ef:activity/change/20260821T1554374006150000/254226 properties ef:agent/rdkit_pre_consensus ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v10 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v11
ef:activity/change/20260821T1554374006150000/257259 altLabel ef:agent/chebi_altlabels ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v11 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v12
ef:activity/change/20260821T1554374006150000/271474 altLabel ef:agent/consensus_match ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v12 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v13
ef:activity/change/20260821T1554374006150000/271475 cas_match_labels ef:agent/consensus_match ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v13 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v14
ef:activity/change/20260821T1554374006150000/279451 properties ef:agent/opsin_iupac ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v14 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v15
ef:activity/change/20260821T1554374006150000/286327 properties ef:agent/rdkit_post_consensus ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v15 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v16
ef:activity/change/20260821T1554374006150000/291675 altLabel ef:agent/strip_catalogue_altlabels ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v16 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v17
ef:activity/change/20260821T1554374006150000/328212 concept_associations ef:agent/carry_associations_onto_flows ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v17 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v18
ef:activity/change/20260821T1554374006150000/393844 properties ef:agent/normalise_property_values ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v18 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v19
ef:activity/change/20260821T1554374006150000/403042 types ef:agent/link_flows_to_their_substance ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v19 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v20
ef:activity/change/20260821T1554374006150000/403043 roles ef:agent/link_flows_to_their_substance ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v20 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v21
ef:activity/change/20260821T1554374006150000/403044 properties ef:agent/link_flows_to_their_substance ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v21 ef:flow/4d9a8790-3ddd-11dd-9a9b-0050c2490048/v22

Keyboard

?
Show or hide this map
Esc
Close

More as the sections are built.