Rifampicin
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9aa9-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NIH 10782' (grade code), 'NSC 113926' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=rifampicin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'13292-46-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-71973b84f04dabf6: {'13292-46-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['13292-46-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28077']; candidate_pubchem_cids=[196968, 280886, 135398735, 135449527, 135512673, 135550179, 135671118, 135678740, 135876149, 135900090, 135921123, 135925261, 135925741, 135926172, 135932822, 136122621, 136246612, 136254574, 136265302, 136619758, 136662670, 137016821, 137086834, 137092548, 137138798, 137145976, 137177954, 137184936, 137191444, 137225336, 137270779, 137286743, 137704761, 138106897, 146161046, 154075449, 171360673, 172916695, 172966639, 176542861]; selected_pubchem_cids=[135398735]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,699 | bootstrap_labels | prefLabel | — | [{"@value":"rifampicin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 19,700 | bootstrap_labels | name | rifampicin | — | Purged legacy name field to enforce prefLabel usage |
| 19,701 | bootstrap_labels | synonyms | ["(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-… | [] | Removed legacy synonyms field in favor of structured labels |
| 94,448 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 94,449 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 219,744 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,569 | normalize_name_case | prefLabel | [{"@value":"rifampicin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Rifampicin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 245,464 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,465 | enrich_references | skos_definition | — | [{"@value":"A member of the class of rifamycins that is a a semisynthetic antibiotic derived from Amycolatopsis rifamyc… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,466 | enrich_references | references | [] | [{"@id":"https://chem.echa.europa.eu/100.032.997","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… | Added references with provenance; cas_numbers=['13292-46-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28077']; candidate_pubchem_cids=[196968, 280886, 135398735, 135449527, 135512673, 135550179, 135671118, 135678740, 135876149, 135900090, 135921123, 135925261, 135925741, 135926172, 135932822, 136122621, 136246612, 136254574, 136265302, 136619758, 136662670, 137016821, 137086834, 137092548, 137138798, 137145976, 137177954, 137184936, 137191444, 137225336, 137270779, 137286743, 137704761, 138106897, 146161046, 154075449, 171360673, 172916695, 172966639, 176542861]; selected_pubchem_cids=[135398735]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,587 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | rdkit_pre_consensus from 'CC1C=CC=C(C(=O)NC2=C(C(=C3C(=C2O)C(=C(C4=C3C(=O)C(O4)(OC=CC(C(C(C(C(C(C1O)C)O)C)OC(=O)C)C)OC)C)C)O)O)C=NN5CCN(CC5)C)C'; added: inchi2d_string, monoisotopic_mass |
| 256,942 | chebi_altlabels | altLabel | [] | [{"@value":"(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-he… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 271,488 | consensus_match | altLabel | [{"@value":"(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-he… | [{"@value":"(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-he… | group_key=rifampicin||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=13292-46-1; added Common Chemistry CAS names as altLabel: 2,7-(Epoxypentadeca[1,11,13]trienimino)naphtho[2,1-<em>b</em>]furan, rifamycin deriv., 2,7-(Epoxypentadeca[1,11,13]trienimino)naphtho[2,1-<em>b</em>]furan-1,11(2<em>H</em>)-dione, 5,6,9,17,19,21-hexahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-8-[<em>N</em>-(4-methyl-1-piperazinyl)formimidoyl]-, 21-acetate, 2,7-(Epoxypentadeca[1,11,13]trienimino)naphtho[2,1-<em>b</em>]furan-1,11(2<em>H</em>)-dione, 5,6,9,17,19,21-hexahydroxy-23-methoxy-2,4,12,16,20,22-heptamethyl-8-[<em>N</em>-(4-methyl-1-piperazinyl)formimidoyl]-, 21-acetate, 3-[(4-Methyl-1-piperazinyl)iminomethyl]rifamycin SV, 3-[[(4-Methyl-1-piperazinyl)imino]methyl]rifamycin, 5,6,9,17,19,21-Hexahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-8-[<em>N</em>-(4-methyl-1-piperazinyl)formimidoyl]-2,7-(epoxypentadeca[1,11,13]trienimino)-naphtho[2,1-<em>b</em>]furan-1,11(2<em>H</em>)-dione 21-acetate, Abrifam, Ba 41166/E, Eremfat, Famcin, L 5103 Lepetit, NIH 10782, NSC 113926, R-Cin, R/AMP, Refampicin, Rifa, Rifacap, Rifactine, Rifadin, Rifadine, Rifaldazine, Rifaldin, Rifampicin SV, Rifamycin AMP, Rifamycin, 3-[[(4-methyl-1-piperazinyl)imino]methyl]-, Rifaprodin, Rifodex, Rifoldin, Rifoldine, Riforal, Rimactan, Rimactane, Rimapen, Sinerdol, Tubocin; object_uuid=fo-71973b84f04dabf6 |
| 271,489 | consensus_match | cas_match_labels | — | {"13292-46-1":"exactMatch"} | group_key=rifampicin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'13292-46-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-71973b84f04dabf6: {'13292-46-1': 'exactMatch'} |
| 285,597 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | rdkit_post_consensus from 'CC1C=CC=C(C(=O)NC2=C(C(=C3C(=C2O)C(=C(C4=C3C(=O)C(O4)(OC=CC(C(C(C(C(C(C1O)C)O)C)OC(=O)C)C)OC)C)C)O)O)C=NN5CCN(CC5)C)C'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,201 | strip_catalogue_altlabels | altLabel | [{"@value":"(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-he… | [{"@value":"(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-he… | Removed 2 catalogue altLabel value(s): 'NIH 10782' (grade code), 'NSC 113926' (registry code) |
| 328,226 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 393,175 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | typed the way the ontology types it |
| 402,008 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,009 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C43H58N4O1… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/19699 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v1 |
| ef:activity/change/20260821T1554374006150000/19700 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v2 |
| ef:activity/change/20260821T1554374006150000/19701 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v3 |
| ef:activity/change/20260821T1554374006150000/94448 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v4 |
| ef:activity/change/20260821T1554374006150000/94449 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v5 |
| ef:activity/change/20260821T1554374006150000/219744 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v6 |
| ef:activity/change/20260821T1554374006150000/225569 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v7 |
| ef:activity/change/20260821T1554374006150000/245464 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v8 |
| ef:activity/change/20260821T1554374006150000/245465 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v9 |
| ef:activity/change/20260821T1554374006150000/245466 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v10 |
| ef:activity/change/20260821T1554374006150000/253587 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v11 |
| ef:activity/change/20260821T1554374006150000/256942 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v12 |
| ef:activity/change/20260821T1554374006150000/271488 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v13 |
| ef:activity/change/20260821T1554374006150000/271489 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v14 |
| ef:activity/change/20260821T1554374006150000/285597 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v15 |
| ef:activity/change/20260821T1554374006150000/291201 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v16 |
| ef:activity/change/20260821T1554374006150000/328226 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v17 |
| ef:activity/change/20260821T1554374006150000/393175 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v18 |
| ef:activity/change/20260821T1554374006150000/402008 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v19 |
| ef:activity/change/20260821T1554374006150000/402009 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9aa9-0050c2490048/v20 |