Senkirkine
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9ac4-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 89945' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=senkirkine||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'2318-18-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f6ec67f1cb501ffd: {'2318-18-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['2318-18-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9111']; candidate_pubchem_cids=[180579, 259733, 5281752, 5363853, 6442498, 92029064, 102004936, 124528381, 146158284, 154825547]; selected_pubchem_cids=[5281752]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 17,790 | bootstrap_labels | prefLabel | — | [{"@value":"senkirkine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 17,791 | bootstrap_labels | name | senkirkine | — | Purged legacy name field to enforce prefLabel usage |
| 17,792 | bootstrap_labels | synonyms | ["(4E,6R,7R,11Z)-4-ethylidene-7-hydroxy-6,7,14-trimethyl-2,9-dioxa-14-azabicyclo[9.5.1]heptadec-11-ene-3,8,17-trione","… | [] | Removed legacy synonyms field in favor of structured labels |
| 94,502 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 94,503 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 219,165 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,167 | normalize_name_case | prefLabel | [{"@value":"senkirkine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Senkirkine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 243,844 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 243,845 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 243,846 | enrich_references | references | [] | [{"@id":"https://chem.echa.europa.eu/100.222.798","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… | Added references with provenance; cas_numbers=['2318-18-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9111']; candidate_pubchem_cids=[180579, 259733, 5281752, 5363853, 6442498, 92029064, 102004936, 124528381, 146158284, 154825547]; selected_pubchem_cids=[5281752]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,118 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | rdkit_pre_consensus from 'C/C=C1/C[C@@H](C)[C@@](C)(O)C(=O)OC/C2=C/CN(C)CC[C@@H](OC1=O)C2=O'; added: monoisotopic_mass |
| 256,721 | chebi_altlabels | altLabel | [] | [{"@value":"Renardine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Added 1 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 271,598 | consensus_match | altLabel | [{"@value":"Renardine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Renardine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | group_key=senkirkine||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=2318-18-5; added Common Chemistry CAS names as altLabel: (1<em>R</em>,4<em>Z</em>,6<em>R</em>,7<em>R</em>)-4-Ethylidene-7-hydroxy-6,7,14-trimethyl-2,9-dioxa-14-azabicyclo[9.5.1]heptadec-11-ene-3,8,17-trione, 2,3,5,7a-Tetrahydro-1,7a-dihydroxy-7-(hydroxymethyl)-4-methyl-1<em>H</em>-pyrrolizinium hydroxide, inner salt, cyclic diester with senecic acid, 2,9-Dioxa-14-azabicyclo[9.5.1]heptadec-11-ene-3,8,17-trione, 4-ethylidene-7-hydroxy-6,7,14-trimethyl-, (1<em>R</em>,4<em>Z</em>,6<em>R</em>,7<em>R</em>)-, 2,9-Dioxa-14-azabicyclo[9.5.1]heptadec-11-ene-3,8,17-trione, 4-ethylidene-7-hydroxy-6,7,14-trimethyl-, [1<em>R</em>-(1<em>R</em>*,4<em>Z</em>,6<em>R</em>*,7<em>R</em>*)]-, 4,8-Secosenecionan-8,11,16-trione, 12-hydroxy-4-methyl-, NSC 89945, Renardin, Renardine (neutral), Senkirkin, Senkirkine (neutral); object_uuid=fo-f6ec67f1cb501ffd |
| 271,599 | consensus_match | cas_match_labels | — | {"2318-18-5":"exactMatch"} | group_key=senkirkine||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'2318-18-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f6ec67f1cb501ffd: {'2318-18-5': 'exactMatch'} |
| 278,322 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1R,4Z,6R,7R)-4-Ethylidene-7-hydroxy-6,7,14-trimethyl-2,9-dioxa-14-azabicyclo[9.5.1]heptadec-11-ene-3,8,17-trione' |
| 285,075 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | rdkit_post_consensus from 'C/C=C1/C[C@@H](C)[C@@](C)(O)C(=O)OCC2=CCN(C)CC[C@@H](OC1=O)C2=O'; added: inchi2d_key_string; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,844 | strip_catalogue_altlabels | altLabel | [{"@value":"Renardine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Renardine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Removed 1 catalogue altLabel value(s): 'NSC 89945' (registry code) |
| 328,253 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 392,682 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | typed the way the ontology types it |
| 401,273 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,274 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H27NO6"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/17790 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v1 |
| ef:activity/change/20260821T1554374006150000/17791 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v2 |
| ef:activity/change/20260821T1554374006150000/17792 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v3 |
| ef:activity/change/20260821T1554374006150000/94502 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v4 |
| ef:activity/change/20260821T1554374006150000/94503 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v5 |
| ef:activity/change/20260821T1554374006150000/219165 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v6 |
| ef:activity/change/20260821T1554374006150000/225167 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v7 |
| ef:activity/change/20260821T1554374006150000/243844 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v8 |
| ef:activity/change/20260821T1554374006150000/243845 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v9 |
| ef:activity/change/20260821T1554374006150000/243846 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v10 |
| ef:activity/change/20260821T1554374006150000/253118 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v11 |
| ef:activity/change/20260821T1554374006150000/256721 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v12 |
| ef:activity/change/20260821T1554374006150000/271598 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v13 |
| ef:activity/change/20260821T1554374006150000/271599 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v14 |
| ef:activity/change/20260821T1554374006150000/278322 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v15 |
| ef:activity/change/20260821T1554374006150000/285075 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v16 |
| ef:activity/change/20260821T1554374006150000/290844 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v17 |
| ef:activity/change/20260821T1554374006150000/328253 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v18 |
| ef:activity/change/20260821T1554374006150000/392682 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v19 |
| ef:activity/change/20260821T1554374006150000/401273 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v20 |
| ef:activity/change/20260821T1554374006150000/401274 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v20 | ef:flow/4d9a8790-3ddd-11dd-9ac4-0050c2490048/v21 |