Strychnine
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9b71-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 5365' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=strychnine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-24-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-37d8758cd60dd88d: {'57-24-9': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['57-24-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28973']; candidate_pubchem_cids=[5304, 5979, 441071, 5702135, 11859396, 24728659, 133611800, 135518420, 135540396]; selected_pubchem_cids=[441071]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 22,201 | bootstrap_labels | prefLabel | — | [{"@value":"strychnine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 22,202 | bootstrap_labels | name | strychnine | — | Purged legacy name field to enforce prefLabel usage |
| 22,791 | bootstrap_labels | synonyms | ["(4br,7as,8ar,13S,13ar,13bs)-5,6,7a,8,8a,11,13a,13b-octahydro-13H-13,14-ethano-7,9-methanooxepino(3,4-a)pyrrolo(2,3-d)… | [] | Removed legacy synonyms field in favor of structured labels |
| 94,852 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 94,853 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 220,419 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,105 | normalize_name_case | prefLabel | [{"@value":"strychnine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Strychnine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 247,318 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 247,319 | enrich_references | skos_definition | — | [{"@value":"A monoterpenoid indole alkaloid that is strychnidine bearing a keto substituent at the 10-position.","@lang… | Merged ChEBI/PubChem definitions into skos:definition |
| 247,320 | enrich_references | references | [] | [{"@id":"bpdb:2066","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['57-24-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28973']; candidate_pubchem_cids=[5304, 5979, 441071, 5702135, 11859396, 24728659, 133611800, 135518420, 135540396]; selected_pubchem_cids=[441071]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,132 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | rdkit_pre_consensus from 'C1CN2CC3=CCOC4CC(=O)N5C6C4C3CC2C61C7=CC=CC=C75'; added: inchi2d_string, monoisotopic_mass |
| 257,185 | chebi_altlabels | altLabel | [] | [{"@value":"Strychnin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,142 | consensus_match | altLabel | [{"@value":"Strychnin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Strychnin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | group_key=strychnine||dimension=Environmental > media=Air > indoor=Unknown; cas=57-24-9; added Common Chemistry CAS names as altLabel: (-)-Strychnine, 4,6-Methano-6<em>H</em>,14<em>H</em>-indolo[3,2,1-<em>ij</em>]oxepino[2,3,4-<em>de</em>]pyrrolo[2,3-<em>h</em>]quinoline, strychnidin-10-one deriv., Certox, MeSH ID: D013331, NSC 5365; object_uuid=fo-37d8758cd60dd88d |
| 272,143 | consensus_match | cas_match_labels | — | {"57-24-9":"exactMatch"} | group_key=strychnine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-24-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-37d8758cd60dd88d: {'57-24-9': 'exactMatch'} |
| 286,221 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | rdkit_post_consensus from 'C1CN2CC3=CCOC4CC(=O)N5C6C4C3CC2C61C7=CC=CC=C75'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,598 | strip_catalogue_altlabels | altLabel | [{"@value":"Strychnin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Strychnin","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Removed 1 catalogue altLabel value(s): 'NSC 5365' (registry code) |
| 328,444 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 393,742 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | typed the way the ontology types it |
| 402,893 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,894 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_25944","rdfs:label":"pesticide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
| 402,895 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H22N2O2… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/22201 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/22202 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/22791 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/94852 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/94853 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/220419 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/226105 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/247318 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/247319 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/247320 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/254132 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/257185 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/272142 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/272143 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/286221 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/291598 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/328444 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/393742 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/402893 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/402894 | roles | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/402895 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v20 | ef:flow/4d9a8790-3ddd-11dd-9b71-0050c2490048/v21 |