Phosmet
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9c07-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'GWN 1976' (grade code), 'R 1504' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=phosmet||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'732-11-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-782d071a2ac3277b: {'732-11-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['732-11-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38786']; candidate_pubchem_cids=[12901]; selected_pubchem_cids=[12901]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 15,474 | bootstrap_labels | prefLabel | — | [{"@value":"phosmet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 15,475 | bootstrap_labels | name | phosmet | — | Purged legacy name field to enforce prefLabel usage |
| 15,476 | bootstrap_labels | synonyms | ["(O,O-Dimethyl-phthalimidiomethyl-dithiophosphate)","2-(dimethoxyphosphinothioylsulfanylmethyl)isoindole-1,3-dione","A… | [] | Removed legacy synonyms field in favor of structured labels |
| 95,152 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 95,153 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 218,436 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,657 | normalize_name_case | prefLabel | [{"@value":"phosmet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Phosmet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 241,784 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 241,785 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 241,786 | enrich_references | references | [] | [{"@id":"beilstein:264869","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['732-11-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38786']; candidate_pubchem_cids=[12901]; selected_pubchem_cids=[12901]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,532 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | rdkit_pre_consensus from 'COP(=S)(OC)SCN1C(=O)C2=CC=CC=C2C1=O'; added: monoisotopic_mass |
| 256,448 | chebi_altlabels | altLabel | [] | [{"@value":"Decemthion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,691 | consensus_match | altLabel | [{"@value":"Decemthion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"Decemthion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | group_key=phosmet||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=732-11-6; added Common Chemistry CAS names as altLabel: <em>N</em>-(Mercaptomethyl)phthalimide <em>S</em>-(<em>O</em>,<em>O</em>-dimethyl phosphorodithioate), <em>S</em>-Phthalimidomethyl <em>O</em>,<em>O</em>-dimethyl phosphorodithioate, Decemthion EK 20, Decemthion P-6, Decemtion, Ftalophos, GWN 1976, Imidan, Imidan 70WP, Imidathion, MeSH ID: D010706, Orbisect, Ordatox, PMP (pesticide), Phosphorodithioic acid, <em>O</em>,<em>O</em>-dimethyl <em>S</em>-phthalimidomethyl ester, Phosphorodithioic acid, <em>O</em>,<em>O</em>-dimethyl ester, <em>S</em>-ester with <em>N</em>-(mercaptomethyl)phthalimide, Phosphorodithioic acid, <em>S</em>-[(1,3-dihydro-1,3-dioxo-2<em>H</em>-isoindol-2-yl)methyl] <em>O</em>,<em>O</em>-dimethyl ester, Phthalophos, Porect, Prolate, R 1504, Safidon, Simidan, Starbar GX 118, Stauffer R 1504; object_uuid=fo-782d071a2ac3277b |
| 270,692 | consensus_match | cas_match_labels | — | {"732-11-6":"exactMatch"} | group_key=phosmet||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'732-11-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-782d071a2ac3277b: {'732-11-6': 'exactMatch'} |
| 277,749 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'O,O-Dimethyl S-(phthalimidomethyl) dithiophosphate' |
| 284,447 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | rdkit_post_consensus from 'COP(=S)(OC)SCN1C(=O)c2ccccc2C1=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,432 | strip_catalogue_altlabels | altLabel | [{"@value":"Decemthion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"Decemthion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Removed 2 catalogue altLabel value(s): 'GWN 1976' (grade code), 'R 1504' (grade code) |
| 328,594 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 392,104 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12NO4P… | typed the way the ontology types it |
| 400,408 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 400,409 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/15474 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/15475 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/15476 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/95152 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/95153 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/218436 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/224657 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/241784 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/241785 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/241786 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/252532 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/256448 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/270691 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/270692 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/277749 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/284447 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/290432 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/328594 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/392104 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/400408 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/400409 | roles | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v20 | ef:flow/4d9a8790-3ddd-11dd-9c07-0050c2490048/v21 |