Uracil
Everything that changed this flow. Back to the flow
4d9a8790-3ddd-11dd-9d4d-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 3970' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=uracil||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'66-22-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0228389c9c322c43: {'66-22-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['66-22-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17568']; candidate_pubchem_cids=[649, 1174]; selected_pubchem_cids=[1174]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 6,777 | bootstrap_labels | prefLabel | — | [{"@value":"uracil","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 6,778 | bootstrap_labels | name | uracil | — | Purged legacy name field to enforce prefLabel usage |
| 6,779 | bootstrap_labels | synonyms | ["1ui0","2,4(1H,3H)-Pyrimidinedione","2,4(1H,3H)-Pyrimidinedione (9CI)","2,4(1H,3H)-Pyrimidinedione, labeled with triti… | [] | Removed legacy synonyms field in favor of structured labels |
| 95,798 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 95,799 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 215,601 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,650 | normalize_name_case | prefLabel | [{"@value":"uracil","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Uracil","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 233,681 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,682 | enrich_references | skos_definition | — | [{"@value":"A common and naturally occurring pyrimidine nucleobase in which the pyrimidine ring is substituted with two… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,683 | enrich_references | references | [] | [{"@id":"gmelin:2896","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['66-22-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17568']; candidate_pubchem_cids=[649, 1174]; selected_pubchem_cids=[1174]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,191 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | rdkit_pre_consensus from 'C1=CNC(=O)NC1=O'; added: monoisotopic_mass |
| 255,215 | chebi_altlabels | altLabel | [] | [{"@value":"2,4(1H,3H)-pyrimidinedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,185 | consensus_match | altLabel | [{"@value":"2,4(1H,3H)-pyrimidinedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2,4(1H,3H)-pyrimidinedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=uracil||dimension=Environmental > media=Water > water_body=Long-term; cas=66-22-8; added Common Chemistry CAS names as altLabel: 1,2,3,4-Tetrahydropyrimidine-2,4-dione, 2,4-Dihydroxypyrimidine, 2,4-Pyrimidinediol, 4-Hydroxyuracil, Hybar X, MeSH ID: D014498, NSC 3970, P 10A002, Pirod, Pyrod; object_uuid=fo-0228389c9c322c43 |
| 273,186 | consensus_match | cas_match_labels | — | {"66-22-8":"exactMatch"} | group_key=uracil||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'66-22-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0228389c9c322c43: {'66-22-8': 'exactMatch'} |
| 275,329 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Uracil' |
| 281,839 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | rdkit_post_consensus from 'O=c1cc[nH]c(=O)[nH]1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,641 | strip_catalogue_altlabels | altLabel | [{"@value":"2,4(1H,3H)-pyrimidinedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2,4(1H,3H)-pyrimidinedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 1 catalogue altLabel value(s): 'NSC 3970' (registry code) |
| 328,897 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4d9a8790-3ddd-… | associations resolved on the elementary layer |
| 389,632 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4N2O2"]… | typed the way the ontology types it |
| 396,866 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1302361922970000/6777 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v0 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v1 |
| ef:activity/change/20260821T1302361922970000/6778 | name | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v1 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v2 |
| ef:activity/change/20260821T1302361922970000/6779 | synonyms | ef:agent/bootstrap_labels | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v2 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v3 |
| ef:activity/change/20260821T1302361922970000/95798 | context | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v3 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v4 |
| ef:activity/change/20260821T1302361922970000/95799 | context_iri | ef:agent/default_context_mapping | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v4 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v5 |
| ef:activity/change/20260821T1302361922970000/215601 | unit_iri | ef:agent/unit_normalization | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v5 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v6 |
| ef:activity/change/20260821T1302361922970000/222650 | prefLabel | ef:agent/normalize_name_case | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v6 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v7 |
| ef:activity/change/20260821T1302361922970000/233681 | properties | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v7 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v8 |
| ef:activity/change/20260821T1302361922970000/233682 | skos_definition | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v8 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v9 |
| ef:activity/change/20260821T1302361922970000/233683 | references | ef:agent/enrich_references | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v9 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v10 |
| ef:activity/change/20260821T1302361922970000/250191 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v10 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v11 |
| ef:activity/change/20260821T1302361922970000/255215 | altLabel | ef:agent/chebi_altlabels | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v11 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v12 |
| ef:activity/change/20260821T1302361922970000/273185 | altLabel | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v12 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v13 |
| ef:activity/change/20260821T1302361922970000/273186 | cas_match_labels | ef:agent/consensus_match | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v13 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v14 |
| ef:activity/change/20260821T1302361922970000/275329 | properties | ef:agent/opsin_iupac | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v14 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v15 |
| ef:activity/change/20260821T1302361922970000/281839 | properties | ef:agent/rdkit_post_consensus | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v15 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v16 |
| ef:activity/change/20260821T1302361922970000/288641 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v16 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v17 |
| ef:activity/change/20260821T1302361922970000/328897 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v17 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v18 |
| ef:activity/change/20260821T1302361922970000/389632 | properties | ef:agent/normalise_property_values | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v18 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v19 |
| ef:activity/change/20260821T1302361922970000/396866 | types | ef:agent/link_flows_to_their_substance | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v19 | ef:flow/4d9a8790-3ddd-11dd-9d4d-0050c2490048/v20 |