L-arabinopyranose
Everything that changed this flow. Back to the flow
4e99d39c-a431-4255-9af8-7fccc1b6df58
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| cas_match_labels | 1 | consensus_match | group_key=l-arabinopyranose||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory']; cas_sources={'87-72-9': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-e5ab9289ca06be5b: {'87-72-9': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['87-72-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17535']; candidate_pubchem_cids=[229, 854, 6902, 250274, 439195, 439508, 439731, 439764, 444173, 445916, 641630, 5312129, 5460291, 12306941, 25245970, 59435876]; selected_pubchem_cids=[439195]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,261 | bootstrap_labels | prefLabel | — | [{"@value":"L-arabinopyranose","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… | Bootstrapped prefLabel from legacy name field |
| 12,262 | bootstrap_labels | name | L-arabinopyranose | — | Purged legacy name field to enforce prefLabel usage |
| 12,263 | bootstrap_labels | synonyms | ["(3S,4R,5R)-oxane-2,3,4,5-tetrol","AC1L1NJV","AC1Q59GV","D-arabinopyranose","D-arabinose","FT-0082744","I14-7615","bet… | [] | Removed legacy synonyms field in favor of structured labels |
| 96,652 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 96,653 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 217,396 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 238,826 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,827 | enrich_references | skos_definition | — | [{"@value":"The six-membered ring form of L-arabinose.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_re… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,828 | enrich_references | references | [] | [{"@id":"glytoucan:G88980IR","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo"… | Added references with provenance; cas_numbers=['87-72-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17535']; candidate_pubchem_cids=[229, 854, 6902, 250274, 439195, 439508, 439731, 439764, 444173, 445916, 641630, 5312129, 5460291, 12306941, 25245970, 59435876]; selected_pubchem_cids=[439195]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,662 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | rdkit_pre_consensus from 'C1C(C(C(C(O1)O)O)O)O'; added: inchi2d_string, monoisotopic_mass |
| 256,063 | chebi_altlabels | altLabel | [] | [{"@value":"L-Arabinose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,281 | consensus_match | altLabel | [{"@value":"L-Arabinose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"L-Arabinose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | group_key=l-arabinopyranose||dimension=Environmental > media=Water > water_body=Surface water; cas=87-72-9; added Common Chemistry CAS names as altLabel: Arabinopyranose, <span class="text-smallcaps">L</span>-, Pectinose; object_uuid=fo-e5ab9289ca06be5b |
| 268,282 | consensus_match | cas_match_labels | — | {"87-72-9":"exactMatch"} | group_key=l-arabinopyranose||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory']; cas_sources={'87-72-9': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-e5ab9289ca06be5b: {'87-72-9': 'exactMatch'} |
| 276,843 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-arabinopyranose' |
| 283,489 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | rdkit_post_consensus from 'OC1OC[C@H](O)[C@H](O)[C@H]1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,622 | dedupe_altlabels | altLabel | [{"@value":"L-Arabinose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"L-Arabinose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Deduplicated altLabel values and removed entries matching prefLabel |
| 329,324 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/4e99d39c-a431-… | associations resolved on the elementary layer |
| 391,203 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | typed the way the ontology types it |
| 399,135 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,136 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/12261 | prefLabel | ef:agent/bootstrap_labels | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v0 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v1 |
| ef:activity/change/20260822T0600486828500000/12262 | name | ef:agent/bootstrap_labels | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v1 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v2 |
| ef:activity/change/20260822T0600486828500000/12263 | synonyms | ef:agent/bootstrap_labels | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v2 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v3 |
| ef:activity/change/20260822T0600486828500000/96652 | context | ef:agent/default_context_mapping | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v3 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v4 |
| ef:activity/change/20260822T0600486828500000/96653 | context_iri | ef:agent/default_context_mapping | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v4 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v5 |
| ef:activity/change/20260822T0600486828500000/217396 | unit_iri | ef:agent/unit_normalization | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v5 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v6 |
| ef:activity/change/20260822T0600486828500000/238826 | properties | ef:agent/enrich_references | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v6 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v7 |
| ef:activity/change/20260822T0600486828500000/238827 | skos_definition | ef:agent/enrich_references | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v7 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v8 |
| ef:activity/change/20260822T0600486828500000/238828 | references | ef:agent/enrich_references | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v8 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v9 |
| ef:activity/change/20260822T0600486828500000/251662 | properties | ef:agent/rdkit_pre_consensus | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v9 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v10 |
| ef:activity/change/20260822T0600486828500000/256063 | altLabel | ef:agent/chebi_altlabels | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v10 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v11 |
| ef:activity/change/20260822T0600486828500000/268281 | altLabel | ef:agent/consensus_match | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v11 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v12 |
| ef:activity/change/20260822T0600486828500000/268282 | cas_match_labels | ef:agent/consensus_match | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v12 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v13 |
| ef:activity/change/20260822T0600486828500000/276843 | properties | ef:agent/opsin_iupac | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v13 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v14 |
| ef:activity/change/20260822T0600486828500000/283489 | properties | ef:agent/rdkit_post_consensus | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v14 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v15 |
| ef:activity/change/20260822T0600486828500000/292622 | altLabel | ef:agent/dedupe_altlabels | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v15 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v16 |
| ef:activity/change/20260822T0600486828500000/329324 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v16 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v17 |
| ef:activity/change/20260822T0600486828500000/391203 | properties | ef:agent/normalise_property_values | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v17 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v18 |
| ef:activity/change/20260822T0600486828500000/399135 | types | ef:agent/link_flows_to_their_substance | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v18 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v19 |
| ef:activity/change/20260822T0600486828500000/399136 | properties | ef:agent/link_flows_to_their_substance | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v19 | ef:flow/4e99d39c-a431-4255-9af8-7fccc1b6df58/v20 |