Shikimic acid
Everything that changed this flow. Back to the flow
54924107-4213-430f-8dfc-ed13e936cfd0
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 59257' (registry code) |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=138-59-0; cc_chebi_agreed_name='Shikimic acid'; object_uuid=fo-6912b15741fa4857 |
| cas_match_labels | 1 | consensus_match | group_key=3,4,5-trihydroxycyclohex-1-ene-1-carboxylicacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory']; cas_sources={'138-59-0': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-6912b15741fa4857: {'138-59-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['138-59-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16119']; candidate_pubchem_cids=[1094, 8742, 253124, 7057976, 10986763, 11332752, 21872888, 40970370, 44754882, 49867941]; selected_pubchem_cids=[8742]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 18,432 | bootstrap_labels | prefLabel | — | [{"@value":"3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstr… | Bootstrapped prefLabel from legacy name field |
| 18,433 | bootstrap_labels | name | 3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid | — | Purged legacy name field to enforce prefLabel usage |
| 18,434 | bootstrap_labels | synonyms | ["(3r,4s,5r)-3,4,5-trihydroxycyclohex-1-enecarboxylicacid","shikimicacid","(3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-… | [] | Removed legacy synonyms field in favor of structured labels |
| 100,114 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 100,115 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 219,364 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,294 | normalize_name_case | prefLabel | [{"@value":"3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstr… | [{"@value":"3,4,5-trihydroxycyclohex-1-ene-1-carboxylic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstr… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,398 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,399 | enrich_references | skos_definition | — | [{"@value":"A cyclohexenecarboxylic acid that is cyclohex-1-ene-1-carboxylic acid substituted by hydroxy groups at posi… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,400 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J3.267K","provenance":{"prov:wasGeneratedBy":"enrich_reference… | Added references with provenance; cas_numbers=['138-59-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16119']; candidate_pubchem_cids=[1094, 8742, 253124, 7057976, 10986763, 11332752, 21872888, 40970370, 44754882, 49867941]; selected_pubchem_cids=[8742]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,279 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | rdkit_pre_consensus from 'C1C(C(C(C=C1C(=O)O)O)O)O'; added: inchi2d_string, monoisotopic_mass |
| 256,797 | chebi_altlabels | altLabel | [] | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 261,518 | consensus_match | prefLabel | [{"@value":"3,4,5-trihydroxycyclohex-1-ene-1-carboxylic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstr… | [{"@value":"Shikimic acid","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… | cas=138-59-0; cc_chebi_agreed_name='Shikimic acid'; object_uuid=fo-6912b15741fa4857 |
| 261,519 | consensus_match | altLabel | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | cas=138-59-0; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-6912b15741fa4857 |
| 261,520 | consensus_match | altLabel | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | group_key=3,4,5-trihydroxycyclohex-1-ene-1-carboxylicacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=138-59-0; added Common Chemistry CAS names as altLabel: (-)-3,4,5-Trihydroxy-1-cyclohexene-1-carboxylic acid, (-)-Shikimic acid, (3<em>R</em>,4<em>S</em>,5<em>R</em>)-3,4,5-Trihydroxy-1-cyclohexene-1-carboxylic acid, 1-Cyclohexene-1-carboxylic acid, 3,4,5-trihydroxy-, (3<em>R</em>,4<em>S</em>,5<em>R</em>)-, 1-Cyclohexene-1-carboxylic acid, 3,4,5-trihydroxy-, [3<em>R</em>-(3α,4α,5β)]-, MeSH ID: D012765, NSC 59257, [3<em>R</em>-(3α,4α,5β)]-3,4,5-Trihydroxy-1-cyclohexene-1-carboxylic acid; object_uuid=fo-6912b15741fa4857 |
| 261,521 | consensus_match | cas_match_labels | — | {"138-59-0":"exactMatch"} | group_key=3,4,5-trihydroxycyclohex-1-ene-1-carboxylicacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory']; cas_sources={'138-59-0': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-6912b15741fa4857: {'138-59-0': 'exactMatch'} |
| 285,255 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | rdkit_post_consensus from 'C1C(C(C(C=C1C(=O)O)O)O)O'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,961 | strip_catalogue_altlabels | altLabel | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | [{"@value":"(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid","@language":"en","source":{"prov:wasGeneratedB… | Removed 1 catalogue altLabel value(s): 'NSC 59257' (registry code) |
| 331,054 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/54924107-4213-… | associations resolved on the elementary layer |
| 392,857 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | typed the way the ontology types it |
| 401,523 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,524 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H10O5"],… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1302361922970000/18432 | prefLabel | ef:agent/bootstrap_labels | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v0 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v1 |
| ef:activity/change/20260821T1302361922970000/18433 | name | ef:agent/bootstrap_labels | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v1 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v2 |
| ef:activity/change/20260821T1302361922970000/18434 | synonyms | ef:agent/bootstrap_labels | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v2 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v3 |
| ef:activity/change/20260821T1302361922970000/100114 | context | ef:agent/default_context_mapping | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v3 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v4 |
| ef:activity/change/20260821T1302361922970000/100115 | context_iri | ef:agent/default_context_mapping | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v4 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v5 |
| ef:activity/change/20260821T1302361922970000/219364 | unit_iri | ef:agent/unit_normalization | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v5 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v6 |
| ef:activity/change/20260821T1302361922970000/225294 | prefLabel | ef:agent/normalize_name_case | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v6 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v7 |
| ef:activity/change/20260821T1302361922970000/244398 | properties | ef:agent/enrich_references | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v7 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v8 |
| ef:activity/change/20260821T1302361922970000/244399 | skos_definition | ef:agent/enrich_references | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v8 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v9 |
| ef:activity/change/20260821T1302361922970000/244400 | references | ef:agent/enrich_references | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v9 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v10 |
| ef:activity/change/20260821T1302361922970000/253279 | properties | ef:agent/rdkit_pre_consensus | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v10 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v11 |
| ef:activity/change/20260821T1302361922970000/256797 | altLabel | ef:agent/chebi_altlabels | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v11 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v12 |
| ef:activity/change/20260821T1302361922970000/261518 | prefLabel | ef:agent/consensus_match | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v12 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v13 |
| ef:activity/change/20260821T1302361922970000/261519 | altLabel | ef:agent/consensus_match | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v13 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v14 |
| ef:activity/change/20260821T1302361922970000/261520 | altLabel | ef:agent/consensus_match | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v14 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v15 |
| ef:activity/change/20260821T1302361922970000/261521 | cas_match_labels | ef:agent/consensus_match | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v15 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v16 |
| ef:activity/change/20260821T1302361922970000/285255 | properties | ef:agent/rdkit_post_consensus | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v16 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v17 |
| ef:activity/change/20260821T1302361922970000/290961 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v17 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v18 |
| ef:activity/change/20260821T1302361922970000/331054 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v18 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v19 |
| ef:activity/change/20260821T1302361922970000/392857 | properties | ef:agent/normalise_property_values | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v19 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v20 |
| ef:activity/change/20260821T1302361922970000/401523 | types | ef:agent/link_flows_to_their_substance | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v20 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v21 |
| ef:activity/change/20260821T1302361922970000/401524 | properties | ef:agent/link_flows_to_their_substance | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v21 | ef:flow/54924107-4213-430f-8dfc-ed13e936cfd0/v22 |