Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 7 catalogue altLabel value(s): 'NSC 112278' (registry code), 'NSC 49178' (registry code), 'NSC 83559' (registry code), 'NSC 83560' (registry code), 'NSC 83561' (registry code), 'NSC 83562' (registry code), 'NSC 97202' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=salicylaldehyde||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-02-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f37a5f8785febdf5: {'90-02-8': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['90-02-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16008']; candidate_pubchem_cids=[6998]; selected_pubchem_cids=[6998]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
21,418 bootstrap_labels prefLabel [{"@value":"salicylaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
21,419 bootstrap_labels name salicylaldehyde Purged legacy name field to enforce prefLabel usage
21,420 bootstrap_labels synonyms ["2-Formylphenol","2-HYDROXY-BENZALDEHYDE","2-Hydroxybenzaldehyde","AB1001932","AC1L1NRV","AC1Q6Q92","AC1Q78A0","AKOS00… [] Removed legacy synonyms field in favor of structured labels
100,262 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
100,263 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
220,220 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,946 normalize_name_case prefLabel [{"@value":"salicylaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Salicylaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
246,771 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
246,772 enrich_references skos_definition [{"@value":"A hydroxybenzaldehyde carrying a hydroxy substituent at position 2.","@language":"en","provenance":{"prov:w… Merged ChEBI/PubChem definitions into skos:definition
246,773 enrich_references references [] [{"@id":"gmelin:3273","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['90-02-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16008']; candidate_pubchem_cids=[6998]; selected_pubchem_cids=[6998]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,976 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… rdkit_pre_consensus from 'C1=CC=C(C(=C1)C=O)O'; added: monoisotopic_mass
257,094 chebi_altlabels altLabel [] [{"@value":"2-Hydroxybenzaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,577 consensus_match altLabel [{"@value":"2-Hydroxybenzaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… [{"@value":"2-Hydroxybenzaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… group_key=salicylaldehyde||dimension=Environmental > media=Water > water_body=Surface water; cas=90-02-8; added Common Chemistry CAS names as altLabel: 2-Formylphenol, 2-Hydroxy-1-benzaldehyde, Benzaldehyde, 2-hydroxy-, NSC 112278, NSC 49178, NSC 83559, NSC 83560, NSC 83561, NSC 83562, NSC 97202, Salicylic aldehyde; object_uuid=fo-f37a5f8785febdf5
271,578 consensus_match cas_match_labels {"90-02-8":"exactMatch"} group_key=salicylaldehyde||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-02-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f37a5f8785febdf5: {'90-02-8': 'exactMatch'}
279,180 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Salicylaldehyde'
286,037 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… rdkit_post_consensus from 'O=Cc1ccccc1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,482 strip_catalogue_altlabels altLabel [{"@value":"2-Hydroxybenzaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… [{"@value":"2-Hydroxybenzaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… Removed 7 catalogue altLabel value(s): 'NSC 112278' (registry code), 'NSC 49178' (registry code), 'NSC 83559' (registry code), 'NSC 83560' (registry code), 'NSC 83561' (registry code), 'NSC 83562' (registry code), 'NSC 97202' (registry code)
331,148 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/54d1f50c-9eb8-… associations resolved on the elementary layer
393,571 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H6O2"],"… typed the way the ontology types it
402,617 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
402,618 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_25491","rdfs:label":"nematicide","http://www.w3.org/2004/02/skos/core#def… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/21418 prefLabel ef:agent/bootstrap_labels ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v0 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v1
ef:activity/change/20260820T1416470405690000/21419 name ef:agent/bootstrap_labels ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v1 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v2
ef:activity/change/20260820T1416470405690000/21420 synonyms ef:agent/bootstrap_labels ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v2 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v3
ef:activity/change/20260820T1416470405690000/100262 context ef:agent/default_context_mapping ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v3 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v4
ef:activity/change/20260820T1416470405690000/100263 context_iri ef:agent/default_context_mapping ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v4 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v5
ef:activity/change/20260820T1416470405690000/220220 unit_iri ef:agent/unit_normalization ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v5 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v6
ef:activity/change/20260820T1416470405690000/225946 prefLabel ef:agent/normalize_name_case ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v6 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v7
ef:activity/change/20260820T1416470405690000/246771 properties ef:agent/enrich_references ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v7 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v8
ef:activity/change/20260820T1416470405690000/246772 skos_definition ef:agent/enrich_references ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v8 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v9
ef:activity/change/20260820T1416470405690000/246773 references ef:agent/enrich_references ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v9 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v10
ef:activity/change/20260820T1416470405690000/253976 properties ef:agent/rdkit_pre_consensus ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v10 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v11
ef:activity/change/20260820T1416470405690000/257094 altLabel ef:agent/chebi_altlabels ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v11 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v12
ef:activity/change/20260820T1416470405690000/271577 altLabel ef:agent/consensus_match ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v12 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v13
ef:activity/change/20260820T1416470405690000/271578 cas_match_labels ef:agent/consensus_match ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v13 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v14
ef:activity/change/20260820T1416470405690000/279180 properties ef:agent/opsin_iupac ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v14 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v15
ef:activity/change/20260820T1416470405690000/286037 properties ef:agent/rdkit_post_consensus ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v15 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v16
ef:activity/change/20260820T1416470405690000/291482 altLabel ef:agent/strip_catalogue_altlabels ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v16 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v17
ef:activity/change/20260820T1416470405690000/331148 concept_associations ef:agent/carry_associations_onto_flows ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v17 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v18
ef:activity/change/20260820T1416470405690000/393571 properties ef:agent/normalise_property_values ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v18 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v19
ef:activity/change/20260820T1416470405690000/402617 types ef:agent/link_flows_to_their_substance ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v19 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v20
ef:activity/change/20260820T1416470405690000/402618 roles ef:agent/link_flows_to_their_substance ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v20 ef:flow/54d1f50c-9eb8-4121-9967-d3454081d673/v21

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