Glycine
Everything that changed this flow. Back to the flow
55535b4f-74d8-47a1-8e4d-89a83d5fdca3
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 6 catalogue altLabel value(s): 'AZD 4282' (grade code), 'AZD-4282' (grade code), 'H 1' (grade code), 'NSC 25936' (registry code), 'NSC 2916' (registry code), 'NSC 54188' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=glycine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-40-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5fd668f5acbb03fd: {'56-40-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['56-40-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15428']; candidate_pubchem_cids=[750, 22316, 5257127, 21226085, 23673715]; selected_pubchem_cids=[750]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 5,890 | bootstrap_labels | prefLabel | — | [{"@value":"glycine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 5,891 | bootstrap_labels | name | glycine | — | Purged legacy name field to enforce prefLabel usage |
| 5,892 | bootstrap_labels | synonyms | ["(1-13c)glycinato","(15N)Glycine","2,2-dialkylglycines","2-Aminoacetic acid","AB-131/40217813","AB1002628","AC1L19XW",… | [] | Removed legacy synonyms field in favor of structured labels |
| 100,574 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 100,575 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 215,307 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,454 | normalize_name_case | prefLabel | [{"@value":"glycine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Glycine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 232,845 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 232,846 | enrich_references | skos_definition | — | [{"@value":"The simplest (and the only achiral) proteinogenic amino acid, with a hydrogen atom as its side chain.","@la… | Merged ChEBI/PubChem definitions into skos:definition |
| 232,847 | enrich_references | references | [] | [{"@id":"drugcentral:1319","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['56-40-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15428']; candidate_pubchem_cids=[750, 22316, 5257127, 21226085, 23673715]; selected_pubchem_cids=[750]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,947 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | rdkit_pre_consensus from 'C(C(=O)O)N'; added: monoisotopic_mass |
| 255,118 | chebi_altlabels | altLabel | [] | [{"@value":"Aminoacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,449 | consensus_match | altLabel | [{"@value":"Aminoacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… | [{"@value":"Aminoacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… | group_key=glycine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=56-40-6; added Common Chemistry CAS names as altLabel: 100: PN: WO2022221337 SEQID: 207 claimed protein, 104: PN: WO2022150790 SEQID: 119 claimed protein, 124: PN: WO2022170619 SEQID: 477 claimed protein, 12: PN: WO2019231175 SEQID: 18 claimed protein, 13: PN: WO2024008177 SEQID: 13 claimed protein, 141: PN: WO2022032140 SEQID: 143 claimed protein, 197: PN: WO2022026763 SEQID: 225 claimed protein, 1: PN: CN120157754 SEQID: 143 protein, 1: PN: WO2020113403 TABLE: L1 claimed sequence, 1: PN: WO2020135804 PAGE: 42 claimed sequence, 1: PN: WO2020191289 PAGE: 118 claimed sequence, 1: PN: WO2022133347 PAGE: 52 claimed sequence, 1: PN: WO2023044306 PAGE: 118 claimed sequence, 1: PN: WO2023064923 SEQID: 500 claimed sequence, 1: PN: WO2023125974 PAGE: 36 claimed sequence, 1: PN: WO2024080304 PAGE: 283 claimed sequence, 1: PN: WO2024238595 PAGE: 119 claimed sequence, 1: PN: WO2025124489 SEQID: 143 protein, 2-Aminoacetic acid, 249: PN: WO2025117649 SEQID: 258 sequence, 2: PN: WO2022093718 PAGE: 104 claimed sequence, 33: PN: WO2020048525 SEQID: 41 claimed protein, 35: PN: WO2023241653 SEQID: 43 claimed sequence, 3: PN: WO2022051536 PAGE: 64 claimed sequence, 40: PN: WO2022159984 SEQID: 48 claimed protein, 47: PN: WO2022171068 SEQID: 49 claimed protein, 5: PN: CN112442493 PAGE: 2 claimed sequence, A 3-10, AZD 4282, AZD-4282, AZD4282, Acetic acid, amino-, Aciport, Aminomethanecarboxylic acid, Glicoamin, Glycolixir, Glycosthene, Gyn-Hydralin, H 1, MeSH ID: D005998, NSC 25936, NSC 2916, NSC 54188, Padil; object_uuid=fo-5fd668f5acbb03fd |
| 267,450 | consensus_match | cas_match_labels | — | {"56-40-6":"exactMatch"} | group_key=glycine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-40-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5fd668f5acbb03fd: {'56-40-6': 'exactMatch'} |
| 275,081 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Glycine' |
| 281,576 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | rdkit_post_consensus from 'NCC(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,455 | strip_catalogue_altlabels | altLabel | [{"@value":"Aminoacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… | [{"@value":"Aminoacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… | Removed 6 catalogue altLabel value(s): 'AZD 4282' (grade code), 'AZD-4282' (grade code), 'H 1' (grade code), 'NSC 25936' (registry code), 'NSC 2916' (registry code), 'NSC 54188' (registry code) |
| 331,284 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/55535b4f-74d8-… | associations resolved on the elementary layer |
| 389,391 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H5NO2"],… | typed the way the ontology types it |
| 396,522 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/5890 | prefLabel | ef:agent/bootstrap_labels | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v0 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v1 |
| ef:activity/change/20260822T0600486828500000/5891 | name | ef:agent/bootstrap_labels | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v1 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v2 |
| ef:activity/change/20260822T0600486828500000/5892 | synonyms | ef:agent/bootstrap_labels | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v2 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v3 |
| ef:activity/change/20260822T0600486828500000/100574 | context | ef:agent/default_context_mapping | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v3 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v4 |
| ef:activity/change/20260822T0600486828500000/100575 | context_iri | ef:agent/default_context_mapping | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v4 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v5 |
| ef:activity/change/20260822T0600486828500000/215307 | unit_iri | ef:agent/unit_normalization | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v5 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v6 |
| ef:activity/change/20260822T0600486828500000/222454 | prefLabel | ef:agent/normalize_name_case | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v6 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v7 |
| ef:activity/change/20260822T0600486828500000/232845 | properties | ef:agent/enrich_references | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v7 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v8 |
| ef:activity/change/20260822T0600486828500000/232846 | skos_definition | ef:agent/enrich_references | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v8 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v9 |
| ef:activity/change/20260822T0600486828500000/232847 | references | ef:agent/enrich_references | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v9 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v10 |
| ef:activity/change/20260822T0600486828500000/249947 | properties | ef:agent/rdkit_pre_consensus | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v10 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v11 |
| ef:activity/change/20260822T0600486828500000/255118 | altLabel | ef:agent/chebi_altlabels | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v11 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v12 |
| ef:activity/change/20260822T0600486828500000/267449 | altLabel | ef:agent/consensus_match | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v12 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v13 |
| ef:activity/change/20260822T0600486828500000/267450 | cas_match_labels | ef:agent/consensus_match | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v13 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v14 |
| ef:activity/change/20260822T0600486828500000/275081 | properties | ef:agent/opsin_iupac | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v14 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v15 |
| ef:activity/change/20260822T0600486828500000/281576 | properties | ef:agent/rdkit_post_consensus | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v15 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v16 |
| ef:activity/change/20260822T0600486828500000/288455 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v16 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v17 |
| ef:activity/change/20260822T0600486828500000/331284 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v17 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v18 |
| ef:activity/change/20260822T0600486828500000/389391 | properties | ef:agent/normalise_property_values | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v18 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v19 |
| ef:activity/change/20260822T0600486828500000/396522 | types | ef:agent/link_flows_to_their_substance | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v19 | ef:flow/55535b4f-74d8-47a1-8e4d-89a83d5fdca3/v20 |