Bicuculline
Everything that changed this flow. Back to the flow
57330f0f-3ef1-4adf-be64-0809e06d541f
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 32192' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=bicuculline||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'485-49-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-a12c6574aa868d4c: {'485-49-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['485-49-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3092']; candidate_pubchem_cids=[2376, 10237, 11467399, 53297885, 129317276]; selected_pubchem_cids=[10237]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 13,453 | bootstrap_labels | prefLabel | — | [{"@value":"bicuculline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 13,454 | bootstrap_labels | name | bicuculline | — | Purged legacy name field to enforce prefLabel usage |
| 16,688 | bootstrap_labels | synonyms | ["(+)-Bicuculline","(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodi… | [] | Removed legacy synonyms field in favor of structured labels |
| 101,602 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 101,603 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 217,789 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,214 | normalize_name_case | prefLabel | [{"@value":"bicuculline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Bicuculline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 239,933 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 239,934 | enrich_references | skos_definition | — | [{"@value":"A benzylisoquinoline alkaloid that is 6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinoline which is s… | Merged ChEBI/PubChem definitions into skos:definition |
| 239,935 | enrich_references | references | [] | [{"@id":"beilstein:98786","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… | Added references with provenance; cas_numbers=['485-49-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3092']; candidate_pubchem_cids=[2376, 10237, 11467399, 53297885, 129317276]; selected_pubchem_cids=[10237]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,991 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | rdkit_pre_consensus from 'CN1CCC2=CC3=C(C=C2C1C4C5=C(C6=C(C=C5)OCO6)C(=O)O4)OCO3'; added: inchi2d_string, monoisotopic_mass |
| 256,218 | chebi_altlabels | altLabel | [] | [{"@value":"(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6… | Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,276 | consensus_match | altLabel | [{"@value":"(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6… | [{"@value":"(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6… | group_key=bicuculline||dimension=Environmental > media=Air > indoor=Unknown; cas=485-49-4; added Common Chemistry CAS names as altLabel: (+)-Bicuculline, (6<em>R</em>)-6-[(5<em>S</em>)-5,6,7,8-Tetrahydro-6-methyl-1,3-dioxolo[4,5-<em>g</em>]isoquinolin-5-yl]furo[3,4-<em>e</em>]-1,3-benzodioxol-8(6<em>H</em>)-one, 1,3-Dioxolo[4,5-<em>g</em>]isoquinoline, furo[3,4-<em>e</em>]-1,3-benzodioxol-8(6<em>H</em>)-one deriv., Bucuculline, Furo[3,4-<em>e</em>]-1,3-benzodioxol-8(6<em>H</em>)-one, 6-(5,6,7,8-tetrahydro-6-methyl-1,3-dioxolo[4,5-<em>g</em>]isoquinolin-5-yl)-, [<em>R</em>-(<em>R</em>*,<em>S</em>*)]-, Furo[3,4-<em>e</em>]-1,3-benzodioxol-8(6<em>H</em>)-one, 6-[(5<em>S</em>)-5,6,7,8-tetrahydro-6-methyl-1,3-dioxolo[4,5-<em>g</em>]isoquinolin-5-yl]-, (6<em>R</em>)-, MeSH ID: D001640, NSC 32192; object_uuid=fo-a12c6574aa868d4c |
| 264,277 | consensus_match | cas_match_labels | — | {"485-49-4":"exactMatch"} | group_key=bicuculline||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'485-49-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-a12c6574aa868d4c: {'485-49-4': 'exactMatch'} |
| 277,204 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6H)-one' |
| 283,864 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | rdkit_post_consensus from 'CN1CCc2cc3c(cc2[C@H]1[C@@H]1OC(=O)c2c1ccc1c2OCO1)OCO3'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,040 | strip_catalogue_altlabels | altLabel | [{"@value":"(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6… | [{"@value":"(6R)-6-[(5S)-6-methyl-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-5-yl]furo[3,4-e][1,3]benzodioxol-8(6… | Removed 1 catalogue altLabel value(s): 'NSC 32192' (registry code) |
| 331,818 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/57330f0f-3ef1-… | associations resolved on the elementary layer |
| 391,552 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | typed the way the ontology types it |
| 399,625 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,626 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… | the substance's answer, copied onto its flow |
| 399,627 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H17NO6"… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/13453 | prefLabel | ef:agent/bootstrap_labels | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v0 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v1 |
| ef:activity/change/20260820T0738569779880000/13454 | name | ef:agent/bootstrap_labels | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v1 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v2 |
| ef:activity/change/20260820T0738569779880000/16688 | synonyms | ef:agent/bootstrap_labels | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v2 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v3 |
| ef:activity/change/20260820T0738569779880000/101602 | context | ef:agent/default_context_mapping | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v3 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v4 |
| ef:activity/change/20260820T0738569779880000/101603 | context_iri | ef:agent/default_context_mapping | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v4 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v5 |
| ef:activity/change/20260820T0738569779880000/217789 | unit_iri | ef:agent/unit_normalization | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v5 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v6 |
| ef:activity/change/20260820T0738569779880000/224214 | prefLabel | ef:agent/normalize_name_case | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v6 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v7 |
| ef:activity/change/20260820T0738569779880000/239933 | properties | ef:agent/enrich_references | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v7 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v8 |
| ef:activity/change/20260820T0738569779880000/239934 | skos_definition | ef:agent/enrich_references | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v8 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v9 |
| ef:activity/change/20260820T0738569779880000/239935 | references | ef:agent/enrich_references | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v9 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v10 |
| ef:activity/change/20260820T0738569779880000/251991 | properties | ef:agent/rdkit_pre_consensus | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v10 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v11 |
| ef:activity/change/20260820T0738569779880000/256218 | altLabel | ef:agent/chebi_altlabels | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v11 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v12 |
| ef:activity/change/20260820T0738569779880000/264276 | altLabel | ef:agent/consensus_match | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v12 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v13 |
| ef:activity/change/20260820T0738569779880000/264277 | cas_match_labels | ef:agent/consensus_match | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v13 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v14 |
| ef:activity/change/20260820T0738569779880000/277204 | properties | ef:agent/opsin_iupac | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v14 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v15 |
| ef:activity/change/20260820T0738569779880000/283864 | properties | ef:agent/rdkit_post_consensus | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v15 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v16 |
| ef:activity/change/20260820T0738569779880000/290040 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v16 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v17 |
| ef:activity/change/20260820T0738569779880000/331818 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v17 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v18 |
| ef:activity/change/20260820T0738569779880000/391552 | properties | ef:agent/normalise_property_values | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v18 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v19 |
| ef:activity/change/20260820T0738569779880000/399625 | types | ef:agent/link_flows_to_their_substance | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v19 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v20 |
| ef:activity/change/20260820T0738569779880000/399626 | roles | ef:agent/link_flows_to_their_substance | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v20 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v21 |
| ef:activity/change/20260820T0738569779880000/399627 | properties | ef:agent/link_flows_to_their_substance | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v21 | ef:flow/57330f0f-3ef1-4adf-be64-0809e06d541f/v22 |