Brightway Flows 1.0
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By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 4 chebi_altlabels, consensus_match, dedupe_altlabels, ion_naming_standard the ion naming standard's synonyms, from the substance
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=cerium(3+)||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi']; cas_sources={'18923-26-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-aa8e5ffaaa4530cd: {'18923-26-7': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['18923-26-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48782']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=['Ce']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
21,100 bootstrap_labels prefLabel — [{"@value":"cerium(3+)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… Bootstrapped prefLabel from legacy name field
21,101 bootstrap_labels name cerium(3+) — Purged legacy name field to enforce prefLabel usage
21,102 bootstrap_labels synonyms ["element","cerium"] [] Removed legacy synonyms field in favor of structured labels
102,879 default_context_mapping context — {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
102,880 default_context_mapping context_iri — https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
220,137 unit_normalization unit_iri — https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,877 normalize_name_case prefLabel [{"@value":"cerium(3+)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… [{"@value":"Cerium(3+)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
246,565 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce"],"atte… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0)
246,566 enrich_references skos_definition — [] Merged ChEBI/PubChem definitions into skos:definition
246,567 enrich_references references [] [{"@id":"gmelin:40115","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"brig… Added references with provenance; cas_numbers=['18923-26-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48782']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=['Ce']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,920 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… rdkit_pre_consensus from '[Ce+3]'; added: molecular_formula, monoisotopic_mass
257,062 chebi_altlabels altLabel [] [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,938 consensus_match altLabel [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… group_key=cerium(3+)||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=18923-26-7; added Common Chemistry CAS names as altLabel: Ce<sup>3+</sup>, Cerium (Ce<sup>3+</sup>), Cerium, ion (Ce<sup>3+</sup>), Cerous cation, Cerous ion; object_uuid=fo-aa8e5ffaaa4530cd
264,939 consensus_match cas_match_labels — {"18923-26-7":"exactMatch"} group_key=cerium(3+)||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi']; cas_sources={'18923-26-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-aa8e5ffaaa4530cd: {'18923-26-7': 'exactMatch'}
279,102 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Cerium(3+)'
285,952 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… rdkit_post_consensus from '[Ce+3]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
293,117 dedupe_altlabels altLabel [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Deduplicated altLabel values and removed entries matching prefLabel
332,468 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5953f432-7c43-… associations resolved on the elementary layer
393,520 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… typed the way the ontology types it
402,519 link_flows_to_their_substance types — ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
402,520 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ce","Ce+3"… the substance's answer, copied onto its flow
403,904 ion_naming_standard altLabel [{"@value":"CERIUM (III) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"Cerium(III)","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"ion_naming_standard","prov:wasA… the ion naming standard's synonyms, from the substance

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20261021T0746548129760000/21100 prefLabel ef:agent/bootstrap_labels ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v0 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v1
ef:activity/change/20261021T0746548129760000/21101 name ef:agent/bootstrap_labels ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v1 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v2
ef:activity/change/20261021T0746548129760000/21102 synonyms ef:agent/bootstrap_labels ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v2 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v3
ef:activity/change/20261021T0746548129760000/102879 context ef:agent/default_context_mapping ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v3 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v4
ef:activity/change/20261021T0746548129760000/102880 context_iri ef:agent/default_context_mapping ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v4 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v5
ef:activity/change/20261021T0746548129760000/220137 unit_iri ef:agent/unit_normalization ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v5 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v6
ef:activity/change/20261021T0746548129760000/225877 prefLabel ef:agent/normalize_name_case ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v6 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v7
ef:activity/change/20261021T0746548129760000/246565 properties ef:agent/enrich_references ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v7 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v8
ef:activity/change/20261021T0746548129760000/246566 skos_definition ef:agent/enrich_references ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v8 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v9
ef:activity/change/20261021T0746548129760000/246567 references ef:agent/enrich_references ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v9 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v10
ef:activity/change/20261021T0746548129760000/253920 properties ef:agent/rdkit_pre_consensus ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v10 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v11
ef:activity/change/20261021T0746548129760000/257062 altLabel ef:agent/chebi_altlabels ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v11 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v12
ef:activity/change/20261021T0746548129760000/264938 altLabel ef:agent/consensus_match ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v12 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v13
ef:activity/change/20261021T0746548129760000/264939 cas_match_labels ef:agent/consensus_match ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v13 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v14
ef:activity/change/20261021T0746548129760000/279102 properties ef:agent/opsin_iupac ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v14 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v15
ef:activity/change/20261021T0746548129760000/285952 properties ef:agent/rdkit_post_consensus ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v15 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v16
ef:activity/change/20261021T0746548129760000/293117 altLabel ef:agent/dedupe_altlabels ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v16 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v17
ef:activity/change/20261021T0746548129760000/332468 concept_associations ef:agent/carry_associations_onto_flows ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v17 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v18
ef:activity/change/20261021T0746548129760000/393520 properties ef:agent/normalise_property_values ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v18 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v19
ef:activity/change/20261021T0746548129760000/402519 types ef:agent/link_flows_to_their_substance ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v19 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v20
ef:activity/change/20261021T0746548129760000/402520 properties ef:agent/link_flows_to_their_substance ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v20 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v21
ef:activity/change/20261021T0746548129760000/403904 altLabel ef:agent/ion_naming_standard ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v21 ef:flow/5953f432-7c43-41ae-b4a3-23f8be3641fc/v22

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