Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 4 catalogue altLabel value(s): 'E 218' (grade code), 'E 218 (preservative)' (grade code), 'NSC 3827' (registry code), 'NSC 406127' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=99-76-3; cc_chebi_agreed_name='Methylparaben'; object_uuid=fo-5497795308f1ce1f
cas_match_labels 1 consensus_match group_key=methyl4-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'99-76-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5497795308f1ce1f: {'99-76-3': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['99-76-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31835']; candidate_pubchem_cids=[7456, 87117, 13498053]; selected_pubchem_cids=[7456]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
13,213 bootstrap_labels prefLabel [{"@value":"methyl 4-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Bootstrapped prefLabel from legacy name field
13,214 bootstrap_labels name methyl 4-hydroxybenzoate Purged legacy name field to enforce prefLabel usage
13,215 bootstrap_labels synonyms ["organic"] [] Removed legacy synonyms field in favor of structured labels
103,092 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
103,093 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
217,706 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,154 normalize_name_case prefLabel [{"@value":"methyl 4-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… [{"@value":"Methyl 4-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
239,709 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
239,710 enrich_references skos_definition [{"@value":"A 4-hydroxybenzoate ester resulting from the formal condensation of the carboxy group of 4-hydroxybenzoic a… Merged ChEBI/PubChem definitions into skos:definition
239,711 enrich_references references [] [{"@id":"drugcentral:1766","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['99-76-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31835']; candidate_pubchem_cids=[7456, 87117, 13498053]; selected_pubchem_cids=[7456]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
251,919 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… rdkit_pre_consensus from 'COC(=O)C1=CC=C(C=C1)O'; added: monoisotopic_mass
256,185 chebi_altlabels altLabel [] [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Added 26 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,763 consensus_match prefLabel [{"@value":"Methyl 4-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… [{"@value":"Methylparaben","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… cas=99-76-3; cc_chebi_agreed_name='Methylparaben'; object_uuid=fo-5497795308f1ce1f
268,764 consensus_match altLabel [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… cas=99-76-3; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-5497795308f1ce1f
268,765 consensus_match altLabel [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… group_key=methyl4-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; cas=99-76-3; added Common Chemistry CAS names as altLabel: 4-(Carbomethoxy)phenol, 4-(Methoxycarbonyl)phenol, 4-Hydroxymethyl benzoate, Benzoic acid, 4-hydroxy-, methyl ester, Benzoic acid, <em>p</em>-hydroxy-, methyl ester, Danisol M, E 218 (preservative), Killitol, MEKKINS-M, Mekkings M, Metagin, Methyl 4-(3′-butenyloxy)benzoate, Methyl Parasept, Methylben, NSC 3827, NSC 406127, Nipagin M, Para M, Paraben M, Preserval M, Solbrol M, Tegasept Methyl, Ueno Me Paraben NF; object_uuid=fo-5497795308f1ce1f
268,766 consensus_match cas_match_labels {"99-76-3":"exactMatch"} group_key=methyl4-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'99-76-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5497795308f1ce1f: {'99-76-3': 'exactMatch'}
277,114 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Methylparaben'
283,774 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… rdkit_post_consensus from 'COC(=O)c1ccc(O)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,972 strip_catalogue_altlabels altLabel [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"4-hydroxybenzoic acid methyl ester","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Removed 4 catalogue altLabel value(s): 'E 218' (grade code), 'E 218 (preservative)' (grade code), 'NSC 3827' (registry code), 'NSC 406127' (registry code)
332,543 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/59af9a45-0fb8-… associations resolved on the elementary layer
391,464 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… typed the way the ontology types it
399,508 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/13213 prefLabel ef:agent/bootstrap_labels ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v0 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v1
ef:activity/change/20260822T0600486828500000/13214 name ef:agent/bootstrap_labels ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v1 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v2
ef:activity/change/20260822T0600486828500000/13215 synonyms ef:agent/bootstrap_labels ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v2 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v3
ef:activity/change/20260822T0600486828500000/103092 context ef:agent/default_context_mapping ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v3 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v4
ef:activity/change/20260822T0600486828500000/103093 context_iri ef:agent/default_context_mapping ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v4 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v5
ef:activity/change/20260822T0600486828500000/217706 unit_iri ef:agent/unit_normalization ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v5 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v6
ef:activity/change/20260822T0600486828500000/224154 prefLabel ef:agent/normalize_name_case ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v6 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v7
ef:activity/change/20260822T0600486828500000/239709 properties ef:agent/enrich_references ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v7 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v8
ef:activity/change/20260822T0600486828500000/239710 skos_definition ef:agent/enrich_references ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v8 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v9
ef:activity/change/20260822T0600486828500000/239711 references ef:agent/enrich_references ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v9 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v10
ef:activity/change/20260822T0600486828500000/251919 properties ef:agent/rdkit_pre_consensus ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v10 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v11
ef:activity/change/20260822T0600486828500000/256185 altLabel ef:agent/chebi_altlabels ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v11 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v12
ef:activity/change/20260822T0600486828500000/268763 prefLabel ef:agent/consensus_match ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v12 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v13
ef:activity/change/20260822T0600486828500000/268764 altLabel ef:agent/consensus_match ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v13 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v14
ef:activity/change/20260822T0600486828500000/268765 altLabel ef:agent/consensus_match ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v14 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v15
ef:activity/change/20260822T0600486828500000/268766 cas_match_labels ef:agent/consensus_match ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v15 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v16
ef:activity/change/20260822T0600486828500000/277114 properties ef:agent/opsin_iupac ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v16 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v17
ef:activity/change/20260822T0600486828500000/283774 properties ef:agent/rdkit_post_consensus ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v17 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v18
ef:activity/change/20260822T0600486828500000/289972 altLabel ef:agent/strip_catalogue_altlabels ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v18 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v19
ef:activity/change/20260822T0600486828500000/332543 concept_associations ef:agent/carry_associations_onto_flows ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v19 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v20
ef:activity/change/20260822T0600486828500000/391464 properties ef:agent/normalise_property_values ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v20 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v21
ef:activity/change/20260822T0600486828500000/399508 types ef:agent/link_flows_to_their_substance ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v21 ef:flow/59af9a45-0fb8-4753-8929-5ea4b0e0206d/v22

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