Amoxicillin
Everything that changed this flow. Back to the flow
5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 4 catalogue altLabel value(s): 'AM 73' (grade code), 'BLP 1410' (grade code), 'BRL 2333' (grade code), 'NSC 277174' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=amoxicillin||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'26787-78-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-104bc3a0d1e794d9: {'26787-78-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['26787-78-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_2676']; candidate_pubchem_cids=[2171, 32324, 33613, 62883, 135920, 211659, 1601369, 4663997, 6426609, 15572034, 22817448, 25230376, 40461267, 45934634]; selected_pubchem_cids=[33613]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 21,407 | bootstrap_labels | prefLabel | — | [{"@value":"amoxicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 21,408 | bootstrap_labels | name | amoxicillin | — | Purged legacy name field to enforce prefLabel usage |
| 22,041 | bootstrap_labels | synonyms | ["(-)-6-(2-Amino-2-(P-hydroxyphenyl)acetamido)-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo-(3.2.0)heptane-2-carboxylic acid"… | [] | Removed legacy synonyms field in favor of structured labels |
| 104,516 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 104,517 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 220,217 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,943 | normalize_name_case | prefLabel | [{"@value":"amoxicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Amoxicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,762 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,763 | enrich_references | skos_definition | — | [{"@value":"A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-(4-hydroxyphenyl)aceta… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,764 | enrich_references | references | [] | [{"@id":"drugcentral:192","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… | Added references with provenance; cas_numbers=['26787-78-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_2676']; candidate_pubchem_cids=[2171, 32324, 33613, 62883, 135920, 211659, 1601369, 4663997, 6426609, 15572034, 22817448, 25230376, 40461267, 45934634]; selected_pubchem_cids=[33613]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,973 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | rdkit_pre_consensus from 'CC1(C(N2C(S1)C(C2=O)NC(=O)C(C3=CC=C(C=C3)O)N)C(=O)O)C'; added: inchi2d_string, monoisotopic_mass |
| 257,093 | chebi_altlabels | altLabel | [] | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]h… | Added 17 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,877 | consensus_match | altLabel | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]h… | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]h… | group_key=amoxicillin||dimension=Environmental > media=Air > indoor=Unknown; cas=26787-78-0; added Common Chemistry CAS names as altLabel: (2<em>S</em>,5<em>R</em>,6<em>R</em>)-6-[[(2<em>R</em>)-2-Amino-2-(4-hydroxyphenyl)acetyl]amino]-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[2-amino-2-(<em>p</em>-hydroxyphenyl)acetamido]-3,3-dimethyl-7-oxo-, <span class="text-smallcaps">D</span>-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[[(2<em>R</em>)-2-amino-2-(4-hydroxyphenyl)acetyl]amino]-3,3-dimethyl-7-oxo-, (2<em>S</em>,5<em>R</em>,6<em>R</em>)-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[[(2<em>R</em>)-amino(4-hydroxyphenyl)acetyl]amino]-3,3-dimethyl-7-oxo-, (2<em>S</em>,5<em>R</em>,6<em>R</em>)-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[[amino(4-hydroxyphenyl)acetyl]amino]-3,3-dimethyl-7-oxo-, [2<em>S</em>-[2α,5α,6β(<em>S</em>*)]]-, 6-[<span class="text-smallcaps">D</span>(-)-α-Amino-<em>p</em>-hydroxyphenylacetamido]penicillanic acid, 6-[<span class="text-smallcaps">D</span>-(-)-2-Amino-2-(<em>p</em>-hydroxyphenyl)acetamido]-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[<span class="text-smallcaps">D</span>-(-)-<em>p</em>-Hydroxy-α-aminobenzyl]penicillin, 6-[<span class="text-smallcaps">D</span>-α-Amino-α-(4-hydroxyphenyl)acetamido]penicillanic acid, <span class="text-smallcaps">D</span>-(-)-α-Amino-<em>p</em>-hydroxybenzyl penicillin, <span class="text-smallcaps">D</span>-(α-Amino-<em>p</em>-hydroxybenzyl)penicillin, <span class="text-smallcaps">D</span>-2-Amino-2-(4-hydroxyphenyl)acetamidopenicillanic acid, <span class="text-smallcaps">D</span>-Amoxicillin, A-Gram, AM 73, Abdimox, Acimox, Actimoxi, Adbiotin, Agerpen, Alfamox, Almodan, Alphamox, Amagesen Solutab, Amcill, Amo-flamsian, Amocilline, Amoclen, Amodex, Amoflux, Amopen, Amoram, Amosine, Amox, Amoxa, Amoxal, Amoxapen, Amoxaren, Amoxcillin, Amoxi, Amoxi-Mast, Amoxi-basan, Amoxibiotic, Amoxicillin Chewable Tablets, Amoxidal, Amoxiden, Amoxidin, Amoxihexal, Amoxil, Amoxillin, Amoxin, Amoxipen, Amoxipenil, Amoxisol, Amoxivan, Amoxivet, Amoxtrex, Amoxy, Amoxy-diolan, Amoxypen, Ampidroxyl, Ampy-Penyl, Anemol, Anemolin, Apitart, Apo-Amoxi, Ardine, Ardine (pharmaceutical), Aspenil, Audumic, Azillin, BLP 1410, BRL 2333, Bactamox, Bactox, Betamox, Bimox, Bintamox, Biomox, Bioxidona, Bioxyllin, Blumox, Bridopen, Bristamox, Cabermox, Cemoxin, Cilamox, Clamox, Coamoxin, Comoxyl, Damoxicil, Delacillin, DisperMox, Draximox, Efpenix, Efpinex, Eupen, Eupensol, Excillin, Farconcil, Fisamox, Flemoxin, Foxolin, Fullcilina, Gemox, Gimalxina, Gomcillin, Gramidil, Grinsil, Grinsul, Grunamox, Helvamox, Hiconcil, Hidramox, Hipen, Histocillin, Hosboral, Ibiamox, Ikamoxil, Imacillin, Imaxilin, Imox, Imoxil, Intermox, Isimoxin, Izoltil, Jerramcil, Kamoxin, Lamoxy, Larocilin, Larotid, Limox, Majorpen, Matasedrin, Maxcil, MeSH ID: D000658, Medimox, Meixil, Metafarma capsules, Metifarma capsules, Mopen, Morgenxil, Mox, Moxacin, Moxaline, Moxarin, Moxatag, Moxcil, Moxilen, Moxlin, Moxylin, Moxypen, Moxyvit, NSC 277174, Novabritine, Novamox, Novamoxin, Novenzymin, Optium, Ospamox, Pamocil, Pamoxicillin, Pasetocin, Penamox, Penbiosyn, Penimox, Pensyn, Piramox, Polymox, Posmox, Protexillin, Rancil, Ranmoxy, Ranoxyl, Reloxyl, Rhamoxilina, Robamox, Rocillin, Ronemox, Saltermox, Samosillin, Samthongcillin, Sawacillin, Sawamezin, Senox, Sia-mox, Sigmopen, Sil-A-mox, Simoxil, Simplamox, Specillin, Sumox, Superpeni, Suprapen, Suramox, Suramox 50, Suramox PM, Teramoxyl, Tolodina, Triafamox, Triamoxil, Trilaxin, Trimox, Twicyl, Unicillin, Utimox, Velamox, Vetomoxin, Vetramox, Virgoxillin, Widecillin, Winmox, Wymox, Yisulon, Zamocillin, Zamox, Zamoxil, Zerrsox, Zimox; object_uuid=fo-104bc3a0d1e794d9 |
| 263,878 | consensus_match | cas_match_labels | — | {"26787-78-0":"exactMatch"} | group_key=amoxicillin||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'26787-78-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-104bc3a0d1e794d9: {'26787-78-0': 'exactMatch'} |
| 286,034 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | rdkit_post_consensus from 'CC1(C(N2C(S1)C(C2=O)NC(=O)C(C3=CC=C(C=C3)O)N)C(=O)O)C'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,480 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]h… | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]h… | Removed 4 catalogue altLabel value(s): 'AM 73' (grade code), 'BLP 1410' (grade code), 'BRL 2333' (grade code), 'NSC 277174' (registry code) |
| 333,275 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5c2ce4ee-0343-… | associations resolved on the elementary layer |
| 393,568 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | typed the way the ontology types it |
| 402,613 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,614 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O5… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/21407 | prefLabel | ef:agent/bootstrap_labels | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v0 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v1 |
| ef:activity/change/20260820T0738569779880000/21408 | name | ef:agent/bootstrap_labels | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v1 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v2 |
| ef:activity/change/20260820T0738569779880000/22041 | synonyms | ef:agent/bootstrap_labels | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v2 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v3 |
| ef:activity/change/20260820T0738569779880000/104516 | context | ef:agent/default_context_mapping | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v3 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v4 |
| ef:activity/change/20260820T0738569779880000/104517 | context_iri | ef:agent/default_context_mapping | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v4 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v5 |
| ef:activity/change/20260820T0738569779880000/220217 | unit_iri | ef:agent/unit_normalization | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v5 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v6 |
| ef:activity/change/20260820T0738569779880000/225943 | prefLabel | ef:agent/normalize_name_case | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v6 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v7 |
| ef:activity/change/20260820T0738569779880000/246762 | properties | ef:agent/enrich_references | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v7 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v8 |
| ef:activity/change/20260820T0738569779880000/246763 | skos_definition | ef:agent/enrich_references | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v8 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v9 |
| ef:activity/change/20260820T0738569779880000/246764 | references | ef:agent/enrich_references | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v9 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v10 |
| ef:activity/change/20260820T0738569779880000/253973 | properties | ef:agent/rdkit_pre_consensus | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v10 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v11 |
| ef:activity/change/20260820T0738569779880000/257093 | altLabel | ef:agent/chebi_altlabels | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v11 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v12 |
| ef:activity/change/20260820T0738569779880000/263877 | altLabel | ef:agent/consensus_match | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v12 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v13 |
| ef:activity/change/20260820T0738569779880000/263878 | cas_match_labels | ef:agent/consensus_match | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v13 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v14 |
| ef:activity/change/20260820T0738569779880000/286034 | properties | ef:agent/rdkit_post_consensus | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v14 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v15 |
| ef:activity/change/20260820T0738569779880000/291480 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v15 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v16 |
| ef:activity/change/20260820T0738569779880000/333275 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v16 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v17 |
| ef:activity/change/20260820T0738569779880000/393568 | properties | ef:agent/normalise_property_values | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v17 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v18 |
| ef:activity/change/20260820T0738569779880000/402613 | types | ef:agent/link_flows_to_their_substance | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v18 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v19 |
| ef:activity/change/20260820T0738569779880000/402614 | properties | ef:agent/link_flows_to_their_substance | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v19 | ef:flow/5c2ce4ee-0343-4b13-baa8-3f9cf84a5a61/v20 |