Beryllium(2+)
Everything that changed this flow. Back to the flow
5e2ee786-509b-4add-8a9b-222e234107c9
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=22537-20-8; cc_chebi_agreed_name='Beryllium(2+)'; object_uuid=fo-7546ea288a538e41 |
| cas_match_labels | 1 | consensus_match | group_key=beryllium(ii)||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi']; cas_sources={'22537-20-8': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-7546ea288a538e41: {'22537-20-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['22537-20-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30502']; candidate_pubchem_cids=[89147, 107649]; selected_pubchem_cids=[107649]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 9,748 | bootstrap_labels | prefLabel | — | [{"@value":"beryllium (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 9,749 | bootstrap_labels | name | beryllium (ii) | — | Purged legacy name field to enforce prefLabel usage |
| 9,750 | bootstrap_labels | synonyms | ["element in usetox"] | [] | Removed legacy synonyms field in favor of structured labels |
| 105,650 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 105,651 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 216,584 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,383 | normalize_name_case | prefLabel | [{"@value":"beryllium (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Beryllium (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 236,499 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 236,500 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 236,501 | enrich_references | references | [] | [{"@id":"gmelin:6849","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['22537-20-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30502']; candidate_pubchem_cids=[89147, 107649]; selected_pubchem_cids=[107649]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,001 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | rdkit_pre_consensus from '[Be+2]'; added: monoisotopic_mass |
| 255,783 | chebi_altlabels | altLabel | [] | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,242 | consensus_match | prefLabel | [{"@value":"Beryllium (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Beryllium(2+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… | cas=22537-20-8; cc_chebi_agreed_name='Beryllium(2+)'; object_uuid=fo-7546ea288a538e41 |
| 264,243 | consensus_match | altLabel | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | cas=22537-20-8; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-7546ea288a538e41 |
| 264,244 | consensus_match | altLabel | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | group_key=beryllium(ii)||dimension=Environmental > media=Air > strata=Long-term; cas=22537-20-8; added Common Chemistry CAS names as altLabel: Be<sup>2+</sup>, Beryllium (Be<sup>2+</sup>), Beryllium ion, Beryllium ion(2+), Beryllium, ion (Be<sup>2+</sup>); object_uuid=fo-7546ea288a538e41 |
| 264,245 | consensus_match | cas_match_labels | — | {"22537-20-8":"exactMatch"} | group_key=beryllium(ii)||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi']; cas_sources={'22537-20-8': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-7546ea288a538e41: {'22537-20-8': 'exactMatch'} |
| 276,201 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Beryllium(2+)' |
| 282,782 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | rdkit_post_consensus from '[Be+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,489 | dedupe_altlabels | altLabel | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | [{"@value":"Be(2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | Deduplicated altLabel values and removed entries matching prefLabel |
| 333,843 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5e2ee786-509b-… | associations resolved on the elementary layer |
| 390,547 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | typed the way the ontology types it |
| 398,194 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 398,195 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be","Be+2"… | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/9748 | prefLabel | ef:agent/bootstrap_labels | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v0 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v1 |
| ef:activity/change/20260820T0738569779880000/9749 | name | ef:agent/bootstrap_labels | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v1 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v2 |
| ef:activity/change/20260820T0738569779880000/9750 | synonyms | ef:agent/bootstrap_labels | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v2 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v3 |
| ef:activity/change/20260820T0738569779880000/105650 | context | ef:agent/default_context_mapping | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v3 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v4 |
| ef:activity/change/20260820T0738569779880000/105651 | context_iri | ef:agent/default_context_mapping | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v4 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v5 |
| ef:activity/change/20260820T0738569779880000/216584 | unit_iri | ef:agent/unit_normalization | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v5 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v6 |
| ef:activity/change/20260820T0738569779880000/223383 | prefLabel | ef:agent/normalize_name_case | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v6 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v7 |
| ef:activity/change/20260820T0738569779880000/236499 | properties | ef:agent/enrich_references | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v7 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v8 |
| ef:activity/change/20260820T0738569779880000/236500 | skos_definition | ef:agent/enrich_references | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v8 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v9 |
| ef:activity/change/20260820T0738569779880000/236501 | references | ef:agent/enrich_references | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v9 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v10 |
| ef:activity/change/20260820T0738569779880000/251001 | properties | ef:agent/rdkit_pre_consensus | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v10 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v11 |
| ef:activity/change/20260820T0738569779880000/255783 | altLabel | ef:agent/chebi_altlabels | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v11 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v12 |
| ef:activity/change/20260820T0738569779880000/264242 | prefLabel | ef:agent/consensus_match | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v12 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v13 |
| ef:activity/change/20260820T0738569779880000/264243 | altLabel | ef:agent/consensus_match | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v13 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v14 |
| ef:activity/change/20260820T0738569779880000/264244 | altLabel | ef:agent/consensus_match | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v14 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v15 |
| ef:activity/change/20260820T0738569779880000/264245 | cas_match_labels | ef:agent/consensus_match | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v15 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v16 |
| ef:activity/change/20260820T0738569779880000/276201 | properties | ef:agent/opsin_iupac | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v16 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v17 |
| ef:activity/change/20260820T0738569779880000/282782 | properties | ef:agent/rdkit_post_consensus | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v17 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v18 |
| ef:activity/change/20260820T0738569779880000/292489 | altLabel | ef:agent/dedupe_altlabels | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v18 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v19 |
| ef:activity/change/20260820T0738569779880000/333843 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v19 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v20 |
| ef:activity/change/20260820T0738569779880000/390547 | properties | ef:agent/normalise_property_values | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v20 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v21 |
| ef:activity/change/20260820T0738569779880000/398194 | types | ef:agent/link_flows_to_their_substance | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v21 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v22 |
| ef:activity/change/20260820T0738569779880000/398195 | properties | ef:agent/link_flows_to_their_substance | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v22 | ef:flow/5e2ee786-509b-4add-8a9b-222e234107c9/v23 |