Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 8204' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=119-36-8; cc_chebi_agreed_name='Methyl salicylate'; object_uuid=fo-851932128ef5cf8c
cas_match_labels 1 consensus_match group_key=methyl2-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'119-36-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-851932128ef5cf8c: {'119-36-8': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['119-36-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31832']; candidate_pubchem_cids=[4133]; selected_pubchem_cids=[4133]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
5,944 bootstrap_labels prefLabel [{"@value":"methyl 2-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Bootstrapped prefLabel from legacy name field
5,945 bootstrap_labels name methyl 2-hydroxybenzoate Purged legacy name field to enforce prefLabel usage
5,946 bootstrap_labels synonyms ["organic","methylsalicylate","2-hydroxybenzoatedemethyle","2-hydroxybenzoicacidmethylester","benzoicacid,2-hydroxy-,me… [] Removed legacy synonyms field in favor of structured labels
105,794 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
105,795 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
215,325 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,467 normalize_name_case prefLabel [{"@value":"methyl 2-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… [{"@value":"Methyl 2-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
232,897 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
232,898 enrich_references skos_definition [{"@value":"A benzoate ester that is the methyl ester of salicylic acid.","@language":"en","provenance":{"prov:wasGener… Merged ChEBI/PubChem definitions into skos:definition
232,899 enrich_references references [] [{"@id":"drugcentral:4245","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['119-36-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31832']; candidate_pubchem_cids=[4133]; selected_pubchem_cids=[4133]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,963 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… rdkit_pre_consensus from 'COC(=O)C1=CC=CC=C1O'; added: monoisotopic_mass
255,122 chebi_altlabels altLabel [] [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… Added 12 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,716 consensus_match prefLabel [{"@value":"Methyl 2-hydroxybenzoate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… [{"@value":"Methyl salicylate","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo… cas=119-36-8; cc_chebi_agreed_name='Methyl salicylate'; object_uuid=fo-851932128ef5cf8c
268,717 consensus_match altLabel [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… cas=119-36-8; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-851932128ef5cf8c
268,718 consensus_match altLabel [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… group_key=methyl2-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; cas=119-36-8; added Common Chemistry CAS names as altLabel: <em>o</em>-Hydroxybenzoic acid methyl ester, Analgit, Anthrapole ND, Ben Gay, Benzoic acid, 2-hydroxy-, methyl ester, Exagien, Flucarmit, Holly oil, Methyl ester 2-hydroxy benzoic acid, Methyl ester of 2-hydroxy benzoic acid, NSC 8204, PredaLure, Salicylic acid, methyl ester, Wintergreen oil; object_uuid=fo-851932128ef5cf8c
268,719 consensus_match cas_match_labels {"119-36-8":"exactMatch"} group_key=methyl2-hydroxybenzoate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'119-36-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-851932128ef5cf8c: {'119-36-8': 'exactMatch'}
275,095 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Methyl salicylate'
281,592 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… rdkit_post_consensus from 'COC(=O)c1ccccc1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,465 strip_catalogue_altlabels altLabel [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… [{"@value":"2-(Methoxycarbonyl)phenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttr… Removed 1 catalogue altLabel value(s): 'NSC 8204' (registry code)
333,895 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5e768e84-f919-… associations resolved on the elementary layer
389,404 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H8O3"],"… typed the way the ontology types it
396,542 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/5944 prefLabel ef:agent/bootstrap_labels ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v0 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v1
ef:activity/change/20260822T0600486828500000/5945 name ef:agent/bootstrap_labels ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v1 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v2
ef:activity/change/20260822T0600486828500000/5946 synonyms ef:agent/bootstrap_labels ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v2 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v3
ef:activity/change/20260822T0600486828500000/105794 context ef:agent/default_context_mapping ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v3 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v4
ef:activity/change/20260822T0600486828500000/105795 context_iri ef:agent/default_context_mapping ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v4 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v5
ef:activity/change/20260822T0600486828500000/215325 unit_iri ef:agent/unit_normalization ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v5 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v6
ef:activity/change/20260822T0600486828500000/222467 prefLabel ef:agent/normalize_name_case ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v6 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v7
ef:activity/change/20260822T0600486828500000/232897 properties ef:agent/enrich_references ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v7 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v8
ef:activity/change/20260822T0600486828500000/232898 skos_definition ef:agent/enrich_references ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v8 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v9
ef:activity/change/20260822T0600486828500000/232899 references ef:agent/enrich_references ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v9 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v10
ef:activity/change/20260822T0600486828500000/249963 properties ef:agent/rdkit_pre_consensus ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v10 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v11
ef:activity/change/20260822T0600486828500000/255122 altLabel ef:agent/chebi_altlabels ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v11 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v12
ef:activity/change/20260822T0600486828500000/268716 prefLabel ef:agent/consensus_match ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v12 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v13
ef:activity/change/20260822T0600486828500000/268717 altLabel ef:agent/consensus_match ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v13 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v14
ef:activity/change/20260822T0600486828500000/268718 altLabel ef:agent/consensus_match ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v14 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v15
ef:activity/change/20260822T0600486828500000/268719 cas_match_labels ef:agent/consensus_match ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v15 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v16
ef:activity/change/20260822T0600486828500000/275095 properties ef:agent/opsin_iupac ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v16 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v17
ef:activity/change/20260822T0600486828500000/281592 properties ef:agent/rdkit_post_consensus ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v17 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v18
ef:activity/change/20260822T0600486828500000/288465 altLabel ef:agent/strip_catalogue_altlabels ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v18 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v19
ef:activity/change/20260822T0600486828500000/333895 concept_associations ef:agent/carry_associations_onto_flows ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v19 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v20
ef:activity/change/20260822T0600486828500000/389404 properties ef:agent/normalise_property_values ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v20 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v21
ef:activity/change/20260822T0600486828500000/396542 types ef:agent/link_flows_to_their_substance ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v21 ef:flow/5e768e84-f919-4b53-ad4a-a6e46aaa9510/v22

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