Bubet
Everything that changed this flow. Back to the flow
5ece2758-5acf-472b-869a-77285c54a70b
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=bubet||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi']; cas_sources={'407-64-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-d95c3e6d09b3e84e: {'407-64-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['407-64-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16244']; candidate_pubchem_cids=[134, 725, 287444]; selected_pubchem_cids=[725]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,334 | bootstrap_labels | prefLabel | — | [{"@value":"bubet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Bootstrapped prefLabel from legacy name field |
| 12,335 | bootstrap_labels | name | bubet | — | Purged legacy name field to enforce prefLabel usage |
| 12,336 | bootstrap_labels | synonyms | ["organic","bubet"] | [] | Removed legacy synonyms field in favor of structured labels |
| 106,040 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 106,041 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 217,420 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,951 | normalize_name_case | prefLabel | [{"@value":"bubet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | [{"@value":"Bubet","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,892 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,893 | enrich_references | skos_definition | — | [{"@value":"An amino-acid betaine γ-aminobutyric acid zwitterion in which all of the hydrogens attached to the nitrogen… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,894 | enrich_references | references | [] | [{"@id":"ecmdb:ECMDB21336","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['407-64-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16244']; candidate_pubchem_cids=[134, 725, 287444]; selected_pubchem_cids=[725]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,680 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | rdkit_pre_consensus from 'C[N+](C)(C)CCCC(=O)[O-]'; added: monoisotopic_mass |
| 256,072 | chebi_altlabels | altLabel | [] | [{"@value":"3-Dehydroxycarnitine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,495 | consensus_match | altLabel | [{"@value":"3-Dehydroxycarnitine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… | [{"@value":"3-Dehydroxycarnitine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… | group_key=bubet||dimension=Environmental > media=Ground > geography=Unknown; cas=407-64-7; added Common Chemistry CAS names as altLabel: (3-Carboxypropyl)trimethylammonium hydroxide, inner salt, 1-Propanaminium, 3-carboxy-<em>N</em>,<em>N</em>,<em>N</em>-trimethyl-, inner salt, Ammonium, (3-carboxypropyl)trimethyl-, hydroxide, inner salt, γ-Aminobutyric acid betaine, γ-Butyrobetaine; object_uuid=fo-d95c3e6d09b3e84e |
| 264,496 | consensus_match | cas_match_labels | — | {"407-64-7":"exactMatch"} | group_key=bubet||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi']; cas_sources={'407-64-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-d95c3e6d09b3e84e: {'407-64-7': 'exactMatch'} |
| 276,866 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '4-(trimethylammonio)butanoate' |
| 283,512 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | rdkit_post_consensus from 'C[N+](C)(C)CCCC(=O)[O-]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,625 | dedupe_altlabels | altLabel | [{"@value":"3-Dehydroxycarnitine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… | [{"@value":"3-Dehydroxycarnitine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… | Deduplicated altLabel values and removed entries matching prefLabel |
| 334,018 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5ece2758-5acf-… | associations resolved on the elementary layer |
| 391,225 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15NO2"]… | typed the way the ontology types it |
| 399,163 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/Zwitterion"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/12334 | prefLabel | ef:agent/bootstrap_labels | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v0 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v1 |
| ef:activity/change/20260821T1554374006150000/12335 | name | ef:agent/bootstrap_labels | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v1 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v2 |
| ef:activity/change/20260821T1554374006150000/12336 | synonyms | ef:agent/bootstrap_labels | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v2 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v3 |
| ef:activity/change/20260821T1554374006150000/106040 | context | ef:agent/default_context_mapping | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v3 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v4 |
| ef:activity/change/20260821T1554374006150000/106041 | context_iri | ef:agent/default_context_mapping | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v4 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v5 |
| ef:activity/change/20260821T1554374006150000/217420 | unit_iri | ef:agent/unit_normalization | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v5 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v6 |
| ef:activity/change/20260821T1554374006150000/223951 | prefLabel | ef:agent/normalize_name_case | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v6 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v7 |
| ef:activity/change/20260821T1554374006150000/238892 | properties | ef:agent/enrich_references | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v7 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v8 |
| ef:activity/change/20260821T1554374006150000/238893 | skos_definition | ef:agent/enrich_references | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v8 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v9 |
| ef:activity/change/20260821T1554374006150000/238894 | references | ef:agent/enrich_references | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v9 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v10 |
| ef:activity/change/20260821T1554374006150000/251680 | properties | ef:agent/rdkit_pre_consensus | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v10 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v11 |
| ef:activity/change/20260821T1554374006150000/256072 | altLabel | ef:agent/chebi_altlabels | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v11 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v12 |
| ef:activity/change/20260821T1554374006150000/264495 | altLabel | ef:agent/consensus_match | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v12 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v13 |
| ef:activity/change/20260821T1554374006150000/264496 | cas_match_labels | ef:agent/consensus_match | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v13 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v14 |
| ef:activity/change/20260821T1554374006150000/276866 | properties | ef:agent/opsin_iupac | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v14 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v15 |
| ef:activity/change/20260821T1554374006150000/283512 | properties | ef:agent/rdkit_post_consensus | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v15 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v16 |
| ef:activity/change/20260821T1554374006150000/292625 | altLabel | ef:agent/dedupe_altlabels | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v16 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v17 |
| ef:activity/change/20260821T1554374006150000/334018 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v17 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v18 |
| ef:activity/change/20260821T1554374006150000/391225 | properties | ef:agent/normalise_property_values | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v18 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v19 |
| ef:activity/change/20260821T1554374006150000/399163 | types | ef:agent/link_flows_to_their_substance | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v19 | ef:flow/5ece2758-5acf-472b-869a-77285c54a70b/v20 |