Consensus flow list

By field

13 fields
Field Changes Written by Latest note
altLabel 5 chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels, substance_label_v1 demoted by the substance's name: Freshwater
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
prefLabel 3 bootstrap_labels, normalize_name_case, substance_label_v1 the substance's name: Fresh water
cas_match_labels 1 consensus_match group_key=freshwater||dimension=Resource > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7732-18-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f49238c7355cdfe4: {'7732-18-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 231-791-2 from CAS 7732-18-5
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7732-18-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15377']; candidate_pubchem_cids=[962, 14798, 5460604, 10214376, 22247451]; selected_pubchem_cids=[962]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'm3'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
23,286 bootstrap_labels prefLabel [{"@value":"freshwater","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
23,287 bootstrap_labels name freshwater Purged legacy name field to enforce prefLabel usage
106,698 default_context_mapping context {"dimension":"Resource","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
106,699 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-wate Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
220,654 unit_normalization unit_iri https://vocab.brightway.one/units/unit/M3 Unit IRI set from normalization of 'm3'
226,301 normalize_name_case prefLabel [{"@value":"freshwater","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Freshwater","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,087 ec_cross_check ec_numbers [] ["231-791-2"] Resolved from EC-inventory: 231-791-2 from CAS 7732-18-5
247,870 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1, commonchemistry_cas=['7732-18-5'])
247,871 enrich_references skos_definition [{"@value":"An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms","@language"… Merged ChEBI/PubChem definitions into skos:definition
247,872 enrich_references references [] [{"@id":"gmelin:117","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consen… Added references with provenance; cas_numbers=['7732-18-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15377']; candidate_pubchem_cids=[962, 14798, 5460604, 10214376, 22247451]; selected_pubchem_cids=[962]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,290 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… rdkit_pre_consensus from 'O'; added: monoisotopic_mass
257,311 chebi_altlabels altLabel [] [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Added 19 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s)
257,495 strip_cross_object_altlabels altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'WATER'
267,324 consensus_match altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… group_key=freshwater||dimension=Resource > media=Water > water_body=Unknown; cas=7732-18-5; added Common Chemistry CAS names as altLabel: Aquafina, Distilled water, Hydrogen oxide (H<sub>2</sub>O), MeSH ID: D014867, Milli-Q water, NSC 147337, R 718, Ultrex II Ultrapure, Water; object_uuid=fo-f49238c7355cdfe4
267,325 consensus_match cas_match_labels {"7732-18-5":"exactMatch"} group_key=freshwater||dimension=Resource > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7732-18-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f49238c7355cdfe4: {'7732-18-5': 'exactMatch'}
279,539 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'dihydridooxygen'
286,421 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… rdkit_post_consensus from 'O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,752 strip_catalogue_altlabels altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Removed 2 catalogue altLabel value(s): 'NSC 147337' (registry code), 'R 718' (grade code)
334,367 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5fdac403-9f2c-… associations resolved on the elementary layer
393,937 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… typed the way the ontology types it
403,198 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule","http://purl.obolibrary.org/obo/ENVO_00002011"] the substance's answer, copied onto its flow
404,107 substance_label_v1 altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… demoted by the substance's name: Freshwater
404,108 substance_label_v1 prefLabel [{"@value":"Freshwater","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Fresh water","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAt… the substance's name: Fresh water

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/23286 prefLabel ef:agent/bootstrap_labels ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v0 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v1
ef:activity/change/20260820T0738569779880000/23287 name ef:agent/bootstrap_labels ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v1 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v2
ef:activity/change/20260820T0738569779880000/106698 context ef:agent/default_context_mapping ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v2 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v3
ef:activity/change/20260820T0738569779880000/106699 context_iri ef:agent/default_context_mapping ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v3 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v4
ef:activity/change/20260820T0738569779880000/220654 unit_iri ef:agent/unit_normalization ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v4 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v5
ef:activity/change/20260820T0738569779880000/226301 prefLabel ef:agent/normalize_name_case ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v5 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v6
ef:activity/change/20260820T0738569779880000/227087 ec_numbers ef:agent/ec_cross_check ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v6 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v7
ef:activity/change/20260820T0738569779880000/247870 properties ef:agent/enrich_references ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v7 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v8
ef:activity/change/20260820T0738569779880000/247871 skos_definition ef:agent/enrich_references ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v8 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v9
ef:activity/change/20260820T0738569779880000/247872 references ef:agent/enrich_references ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v9 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v10
ef:activity/change/20260820T0738569779880000/254290 properties ef:agent/rdkit_pre_consensus ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v10 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v11
ef:activity/change/20260820T0738569779880000/257311 altLabel ef:agent/chebi_altlabels ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v11 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v12
ef:activity/change/20260820T0738569779880000/257495 altLabel ef:agent/strip_cross_object_altlabels ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v12 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v13
ef:activity/change/20260820T0738569779880000/267324 altLabel ef:agent/consensus_match ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v13 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v14
ef:activity/change/20260820T0738569779880000/267325 cas_match_labels ef:agent/consensus_match ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v14 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v15
ef:activity/change/20260820T0738569779880000/279539 properties ef:agent/opsin_iupac ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v15 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v16
ef:activity/change/20260820T0738569779880000/286421 properties ef:agent/rdkit_post_consensus ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v16 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v17
ef:activity/change/20260820T0738569779880000/291752 altLabel ef:agent/strip_catalogue_altlabels ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v17 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v18
ef:activity/change/20260820T0738569779880000/334367 concept_associations ef:agent/carry_associations_onto_flows ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v18 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v19
ef:activity/change/20260820T0738569779880000/393937 properties ef:agent/normalise_property_values ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v19 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v20
ef:activity/change/20260820T0738569779880000/403198 types ef:agent/link_flows_to_their_substance ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v20 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v21
ef:activity/change/20260820T0738569779880000/404107 altLabel ef:agent/substance_label_v1 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v21 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v22
ef:activity/change/20260820T0738569779880000/404108 prefLabel ef:agent/substance_label_v1 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v22 ef:flow/5fdac403-9f2c-4a10-b8d6-5367cc9d2d9b/v23

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