Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'NSC 82174' (registry code), 'Win 18320' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=nalidixicacid||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'389-08-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-873dcc335ca045f7: {'389-08-2': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['389-08-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_100147']; candidate_pubchem_cids=[1775, 4421, 3996620, 15604105]; selected_pubchem_cids=[4421]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
18,991 bootstrap_labels prefLabel [{"@value":"nalidixic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Bootstrapped prefLabel from legacy name field
18,992 bootstrap_labels name nalidixic acid Purged legacy name field to enforce prefLabel usage
18,993 bootstrap_labels synonyms ["1,4-Dihydro-1-ethyl-7-methyl-1,8-naphthyridin-4-one-3-carboxylic acid","1,4-Dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphth… [] Removed legacy synonyms field in favor of structured labels
111,536 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
111,537 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
219,533 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,415 normalize_name_case prefLabel [{"@value":"nalidixic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… [{"@value":"Nalidixic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
244,869 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
244,870 enrich_references skos_definition [{"@value":"A monocarboxylic acid comprising 1,8-naphthyridin-4-one substituted by carboxylic acid, ethyl and methyl gr… Merged ChEBI/PubChem definitions into skos:definition
244,871 enrich_references references [] [{"@id":"drugcentral:1875","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['389-08-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_100147']; candidate_pubchem_cids=[1775, 4421, 3996620, 15604105]; selected_pubchem_cids=[4421]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,413 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… rdkit_pre_consensus from 'CCN1C=C(C(=O)C2=C1N=C(C=C2)C)C(=O)O'; added: monoisotopic_mass
256,857 chebi_altlabels altLabel [] [{"@value":"1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid","@language":"en","source":{"prov:wa… Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
269,699 consensus_match altLabel [{"@value":"1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid","@language":"en","source":{"prov:wa… [{"@value":"1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid","@language":"en","source":{"prov:wa… group_key=nalidixicacid||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=389-08-2; added Common Chemistry CAS names as altLabel: 1,8-Naphthyridine-3-carboxylic acid, 1-ethyl-1,4-dihydro-7-methyl-4-oxo-, 1-Ethyl-7-methyl-1,8-naphthyridin-4-one-3-carboxylic acid, 1-Ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid, Betaxina, Cybis, Dixiben, Eucistin, Innoxalomn, MeSH ID: D009268, NSC 82174, Nacid, Nalidic acid, Nalidicron, Nalidixan, Nalidixin, Nalidixinic acid, Nalidram, Nalitucsan, Nalix, Nalurin, Narigix, Naxuril, NegGram, Nelidix, Nevigramon, Nicelate, Nogram, Poleon, Specifin, Uralgin, Uriben, Uriclar, Urisal, Urodixin, Uroman, Uroneg, Uropan, Win 18320, Wintomylon; object_uuid=fo-873dcc335ca045f7
269,700 consensus_match cas_match_labels {"389-08-2":"exactMatch"} group_key=nalidixicacid||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'389-08-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-873dcc335ca045f7: {'389-08-2': 'exactMatch'}
278,625 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid'
285,402 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… rdkit_post_consensus from 'CCn1cc(C(=O)O)c(=O)c2ccc(C)nc21'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,073 strip_catalogue_altlabels altLabel [{"@value":"1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid","@language":"en","source":{"prov:wa… [{"@value":"1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid","@language":"en","source":{"prov:wa… Removed 2 catalogue altLabel value(s): 'NSC 82174' (registry code), 'Win 18320' (grade code)
336,767 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/67c7fae4-5490-… associations resolved on the elementary layer
392,990 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H12N2O3… typed the way the ontology types it
401,731 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/18991 prefLabel ef:agent/bootstrap_labels ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v0 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v1
ef:activity/change/20260822T0600486828500000/18992 name ef:agent/bootstrap_labels ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v1 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v2
ef:activity/change/20260822T0600486828500000/18993 synonyms ef:agent/bootstrap_labels ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v2 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v3
ef:activity/change/20260822T0600486828500000/111536 context ef:agent/default_context_mapping ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v3 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v4
ef:activity/change/20260822T0600486828500000/111537 context_iri ef:agent/default_context_mapping ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v4 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v5
ef:activity/change/20260822T0600486828500000/219533 unit_iri ef:agent/unit_normalization ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v5 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v6
ef:activity/change/20260822T0600486828500000/225415 prefLabel ef:agent/normalize_name_case ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v6 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v7
ef:activity/change/20260822T0600486828500000/244869 properties ef:agent/enrich_references ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v7 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v8
ef:activity/change/20260822T0600486828500000/244870 skos_definition ef:agent/enrich_references ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v8 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v9
ef:activity/change/20260822T0600486828500000/244871 references ef:agent/enrich_references ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v9 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v10
ef:activity/change/20260822T0600486828500000/253413 properties ef:agent/rdkit_pre_consensus ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v10 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v11
ef:activity/change/20260822T0600486828500000/256857 altLabel ef:agent/chebi_altlabels ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v11 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v12
ef:activity/change/20260822T0600486828500000/269699 altLabel ef:agent/consensus_match ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v12 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v13
ef:activity/change/20260822T0600486828500000/269700 cas_match_labels ef:agent/consensus_match ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v13 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v14
ef:activity/change/20260822T0600486828500000/278625 properties ef:agent/opsin_iupac ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v14 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v15
ef:activity/change/20260822T0600486828500000/285402 properties ef:agent/rdkit_post_consensus ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v15 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v16
ef:activity/change/20260822T0600486828500000/291073 altLabel ef:agent/strip_catalogue_altlabels ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v16 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v17
ef:activity/change/20260822T0600486828500000/336767 concept_associations ef:agent/carry_associations_onto_flows ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v17 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v18
ef:activity/change/20260822T0600486828500000/392990 properties ef:agent/normalise_property_values ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v18 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v19
ef:activity/change/20260822T0600486828500000/401731 types ef:agent/link_flows_to_their_substance ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v19 ef:flow/67c7fae4-5490-4b3a-abf6-337ea2178d1d/v20

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