(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic Acid
Everything that changed this flow. Back to the flow
684d978d-e2e2-4989-8311-03f330ae6fe8
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi']; cas_sources={'13115-71-4': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-4b901ed95dd4662d: {'13115-71-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['13115-71-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_73898']; candidate_pubchem_cids=[123913, 159369, 597739, 24820180, 44182004]; selected_pubchem_cids=[123913]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,132 | bootstrap_labels | prefLabel | — | [{"@value":"(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"… | Bootstrapped prefLabel from legacy name field |
| 12,133 | bootstrap_labels | name | (2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic acid | — | Purged legacy name field to enforce prefLabel usage |
| 12,134 | bootstrap_labels | synonyms | ["organic"] | [] | Removed legacy synonyms field in favor of structured labels |
| 111,930 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 111,931 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 217,362 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,905 | normalize_name_case | prefLabel | [{"@value":"(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"… | [{"@value":"(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic Acid","@language":"en","source":{"prov:wasGeneratedBy":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,717 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,718 | enrich_references | skos_definition | — | [{"@value":"A dipeptide formed from glycine and L-glutamine residues.","@language":"en","provenance":{"prov:wasGenerate… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,719 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J367.005H","provenance":{"prov:wasGeneratedBy":"enrich_referen… | Added references with provenance; cas_numbers=['13115-71-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_73898']; candidate_pubchem_cids=[123913, 159369, 597739, 24820180, 44182004]; selected_pubchem_cids=[123913]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,638 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | rdkit_pre_consensus from 'C(CC(=O)N)C(C(=O)O)NC(=O)CN'; added: inchi2d_string, monoisotopic_mass |
| 256,055 | chebi_altlabels | altLabel | [] | [{"@value":"GQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,680 | consensus_match | altLabel | [{"@value":"GQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"GQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | group_key=(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=13115-71-4; added Common Chemistry CAS names as altLabel: (2S)-2-(2-Aminoacetamido)-4-carbamoylbutanoic acid, (2S)-5-Amino-2-[(2-azaniumylacetyl)amino]-5-oxopentanoate, (<em>S</em>)-5-Amino-2-(2-aminoacetamido)-5-oxopentanoic acid, 101: PN: WO2011146121 PAGE: 115 claimed sequence, 105: PN: EP2161028 PAGE: 10 claimed protein, 143: PN: US20130123467 SEQID: 172 claimed protein, 15: PN: WO2021055880 SEQID: 16 claimed protein, 16: PN: WO2025195306 SEQID: 288 sequence, 1: PN: WO2025015657 SEQID: 1 claimed sequence, 23: PN: WO2020009548 SEQID: 23 claimed protein, 23: PN: WO2021211467 SEQID: 176 claimed sequence, 6: PN: WO2023160499 SEQID: 6 claimed sequence, <span class="text-smallcaps">L</span>-Glutamine, <em>N</em><sup>2</sup>-glycyl-, <span class="text-smallcaps">L</span>-Glutamine, glycyl-, Glutamine, <em>N</em><sup>2</sup>-glycyl-, <span class="text-smallcaps">L</span>-; object_uuid=fo-4b901ed95dd4662d |
| 257,681 | consensus_match | cas_match_labels | — | {"13115-71-4":"exactMatch"} | group_key=(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi']; cas_sources={'13115-71-4': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-4b901ed95dd4662d: {'13115-71-4': 'exactMatch'} |
| 276,831 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(2s)-5-amino-2-[(aminoacetyl)amino]-5-oxopentanoic Acid' |
| 283,473 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | rdkit_post_consensus from 'NCC(=O)N[C@@H](CCC(N)=O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,641 | dedupe_altlabels | altLabel | [{"@value":"GQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"GQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Deduplicated altLabel values and removed entries matching prefLabel |
| 336,984 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/684d978d-e2e2-… | associations resolved on the elementary layer |
| 391,191 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | typed the way the ontology types it |
| 399,111 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,112 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H13N3O4"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/12132 | prefLabel | ef:agent/bootstrap_labels | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v0 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v1 |
| ef:activity/change/20260820T0738569779880000/12133 | name | ef:agent/bootstrap_labels | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v1 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v2 |
| ef:activity/change/20260820T0738569779880000/12134 | synonyms | ef:agent/bootstrap_labels | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v2 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v3 |
| ef:activity/change/20260820T0738569779880000/111930 | context | ef:agent/default_context_mapping | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v3 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v4 |
| ef:activity/change/20260820T0738569779880000/111931 | context_iri | ef:agent/default_context_mapping | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v4 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v5 |
| ef:activity/change/20260820T0738569779880000/217362 | unit_iri | ef:agent/unit_normalization | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v5 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v6 |
| ef:activity/change/20260820T0738569779880000/223905 | prefLabel | ef:agent/normalize_name_case | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v6 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v7 |
| ef:activity/change/20260820T0738569779880000/238717 | properties | ef:agent/enrich_references | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v7 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v8 |
| ef:activity/change/20260820T0738569779880000/238718 | skos_definition | ef:agent/enrich_references | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v8 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v9 |
| ef:activity/change/20260820T0738569779880000/238719 | references | ef:agent/enrich_references | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v9 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v10 |
| ef:activity/change/20260820T0738569779880000/251638 | properties | ef:agent/rdkit_pre_consensus | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v10 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v11 |
| ef:activity/change/20260820T0738569779880000/256055 | altLabel | ef:agent/chebi_altlabels | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v11 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v12 |
| ef:activity/change/20260820T0738569779880000/257680 | altLabel | ef:agent/consensus_match | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v12 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v13 |
| ef:activity/change/20260820T0738569779880000/257681 | cas_match_labels | ef:agent/consensus_match | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v13 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v14 |
| ef:activity/change/20260820T0738569779880000/276831 | properties | ef:agent/opsin_iupac | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v14 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v15 |
| ef:activity/change/20260820T0738569779880000/283473 | properties | ef:agent/rdkit_post_consensus | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v15 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v16 |
| ef:activity/change/20260820T0738569779880000/292641 | altLabel | ef:agent/dedupe_altlabels | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v16 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v17 |
| ef:activity/change/20260820T0738569779880000/336984 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v17 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v18 |
| ef:activity/change/20260820T0738569779880000/391191 | properties | ef:agent/normalise_property_values | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v18 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v19 |
| ef:activity/change/20260820T0738569779880000/399111 | types | ef:agent/link_flows_to_their_substance | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v19 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v20 |
| ef:activity/change/20260820T0738569779880000/399112 | properties | ef:agent/link_flows_to_their_substance | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v20 | ef:flow/684d978d-e2e2-4989-8311-03f330ae6fe8/v21 |