Sodium, ion
Everything that changed this flow. Back to the flow
6a3f413e-8aab-4c58-93b0-1f51c9714adb
By field
12 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, normalize_name_case, substance_label_v1 | the substance's name: Sodium, ion |
| cas_match_labels | 1 | consensus_match | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'17341-25-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-6e3a6a9b38748e32: {'17341-25-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['17341-25-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29101']; candidate_pubchem_cids=[923, 96816]; selected_pubchem_cids=[923]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 20,455 | bootstrap_labels | prefLabel | — | [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 20,456 | bootstrap_labels | name | Sodium, ion | — | Purged legacy name field to enforce prefLabel usage |
| 113,046 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 113,047 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 219,967 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,735 | normalize_name_case | prefLabel | [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,081 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,082 | enrich_references | skos_definition | — | [{"@value":"A monoatomic monocation obtained from sodium.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,083 | enrich_references | references | [] | [{"@id":"gmelin:15196","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['17341-25-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29101']; candidate_pubchem_cids=[923, 96816]; selected_pubchem_cids=[923]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,774 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | rdkit_pre_consensus from '[Na+]'; added: monoisotopic_mass |
| 257,015 | chebi_altlabels | altLabel | [] | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,067 | consensus_match | altLabel | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; cas=17341-25-2; added Common Chemistry CAS names as altLabel: Na<sup>1+</sup>, Sodium (Na<sup>1+</sup>), Sodium cation(1+), Sodium ion(1+), Sodium, ion (Na<sup>1+</sup>), Sodium-23(1+); object_uuid=fo-6e3a6a9b38748e32 |
| 272,068 | consensus_match | cas_match_labels | — | {"17341-25-2":"exactMatch"} | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'17341-25-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-6e3a6a9b38748e32: {'17341-25-2': 'exactMatch'} |
| 278,992 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'sodium(1+)' |
| 285,812 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | rdkit_post_consensus from '[Na+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,107 | dedupe_altlabels | altLabel | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Deduplicated altLabel values and removed entries matching prefLabel |
| 337,542 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/6a3f413e-8aab-… | associations resolved on the elementary layer |
| 393,375 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | typed the way the ontology types it |
| 402,294 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 402,295 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | the substance's answer, copied onto its flow |
| 404,002 | substance_label_v1 | prefLabel | [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Sodium, ion","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAt… | the substance's name: Sodium, ion |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/20455 | prefLabel | ef:agent/bootstrap_labels | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v0 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v1 |
| ef:activity/change/20260820T1416470405690000/20456 | name | ef:agent/bootstrap_labels | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v1 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v2 |
| ef:activity/change/20260820T1416470405690000/113046 | context | ef:agent/default_context_mapping | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v2 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v3 |
| ef:activity/change/20260820T1416470405690000/113047 | context_iri | ef:agent/default_context_mapping | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v3 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v4 |
| ef:activity/change/20260820T1416470405690000/219967 | unit_iri | ef:agent/unit_normalization | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v4 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v5 |
| ef:activity/change/20260820T1416470405690000/225735 | prefLabel | ef:agent/normalize_name_case | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v5 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v6 |
| ef:activity/change/20260820T1416470405690000/246081 | properties | ef:agent/enrich_references | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v6 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v7 |
| ef:activity/change/20260820T1416470405690000/246082 | skos_definition | ef:agent/enrich_references | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v7 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v8 |
| ef:activity/change/20260820T1416470405690000/246083 | references | ef:agent/enrich_references | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v8 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v9 |
| ef:activity/change/20260820T1416470405690000/253774 | properties | ef:agent/rdkit_pre_consensus | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v9 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v10 |
| ef:activity/change/20260820T1416470405690000/257015 | altLabel | ef:agent/chebi_altlabels | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v10 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v11 |
| ef:activity/change/20260820T1416470405690000/272067 | altLabel | ef:agent/consensus_match | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v11 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v12 |
| ef:activity/change/20260820T1416470405690000/272068 | cas_match_labels | ef:agent/consensus_match | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v12 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v13 |
| ef:activity/change/20260820T1416470405690000/278992 | properties | ef:agent/opsin_iupac | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v13 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v14 |
| ef:activity/change/20260820T1416470405690000/285812 | properties | ef:agent/rdkit_post_consensus | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v14 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v15 |
| ef:activity/change/20260820T1416470405690000/293107 | altLabel | ef:agent/dedupe_altlabels | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v15 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v16 |
| ef:activity/change/20260820T1416470405690000/337542 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v16 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v17 |
| ef:activity/change/20260820T1416470405690000/393375 | properties | ef:agent/normalise_property_values | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v17 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v18 |
| ef:activity/change/20260820T1416470405690000/402294 | types | ef:agent/link_flows_to_their_substance | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v18 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v19 |
| ef:activity/change/20260820T1416470405690000/402295 | properties | ef:agent/link_flows_to_their_substance | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v19 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v20 |
| ef:activity/change/20260820T1416470405690000/404002 | prefLabel | ef:agent/substance_label_v1 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v20 | ef:flow/6a3f413e-8aab-4c58-93b0-1f51c9714adb/v21 |