Pentachlorophenol
Everything that changed this flow. Back to the flow
6acaf758-e408-411b-a5c5-5ebaa4854c8f
By field
15 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'EP 30' (grade code), 'EP 30 (pesticide)' (grade code), 'NSC 263497' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=pentachlorophenol||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'87-86-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-63454ca6db1faf72: {'87-86-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 201-778-6 from CAS 87-86-5 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['87-86-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17642']; candidate_pubchem_cids=[992, 21864]; selected_pubchem_cids=[992]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 6,867 | bootstrap_labels | prefLabel | — | [{"@value":"pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… | Bootstrapped prefLabel from legacy name field |
| 6,868 | bootstrap_labels | name | pentachlorophenol | — | Purged legacy name field to enforce prefLabel usage |
| 6,869 | bootstrap_labels | synonyms | ["1-Hydroxy-2,3,4,5,6-pentachlorobenzene","1-Hydroxypentachlorobenzene","1y4z","2,3,4,5,6-Pentachlorophenol","2,3,4,5,6… | [] | Removed legacy synonyms field in favor of structured labels |
| 113,352 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 113,353 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 215,637 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,677 | normalize_name_case | prefLabel | [{"@value":"pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… | [{"@value":"Pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 226,795 | ec_cross_check | ec_numbers | [] | ["201-778-6"] | Resolved from EC-inventory: 201-778-6 from CAS 87-86-5 |
| 233,778 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,779 | enrich_references | skos_definition | — | [{"@value":"A chlorophenol that is phenol substituted by 5 chloro groups.","@language":"en","provenance":{"prov:wasGene… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,780 | enrich_references | references | [] | [{"@id":"gmelin:102794","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['87-86-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17642']; candidate_pubchem_cids=[992, 21864]; selected_pubchem_cids=[992]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,225 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | rdkit_pre_consensus from 'C1(=C(C(=C(C(=C1Cl)Cl)Cl)Cl)Cl)O'; added: monoisotopic_mass |
| 255,240 | chebi_altlabels | altLabel | [] | [{"@value":"2,3,4,5,6-pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,443 | consensus_match | altLabel | [{"@value":"2,3,4,5,6-pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | [{"@value":"2,3,4,5,6-pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | group_key=pentachlorophenol||dimension=Environmental > media=Ground > geography=Agricultural; cas=87-86-5; added Common Chemistry CAS names as altLabel: 1-Hydroxy-2,3,4,5,6-pentachlorobenzene, 1-Hydroxypentachlorobenzene, Chlon, Chlorophenasic acid, Dowicide 7, Dowicide EC 7, Dura Treet II, EP 30, EP 30 (pesticide), Fungifen, Grundier Arbezol, Lauxtol, Liroprem, MeSH ID: D010416, NSC 263497, PCP (pesticide), PKhF, Penchlorol, Penta, Penton 70, Pentor 70, Perchlorophenol, Permasan, Phenol, 2,3,4,5,6-pentachloro-, Phenol, pentachloro-, Pol Nu, Pole topper, Pole topper fluid, Preventol P, Santophen 20, Satophen, Witophen P, Woodtreat A; object_uuid=fo-63454ca6db1faf72 |
| 270,444 | consensus_match | cas_match_labels | — | {"87-86-5":"exactMatch"} | group_key=pentachlorophenol||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'87-86-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-63454ca6db1faf72: {'87-86-5': 'exactMatch'} |
| 275,380 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Pentachlorophenol' |
| 281,888 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | rdkit_post_consensus from 'Oc1c(Cl)c(Cl)c(Cl)c(Cl)c1Cl'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,678 | strip_catalogue_altlabels | altLabel | [{"@value":"2,3,4,5,6-pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | [{"@value":"2,3,4,5,6-pentachlorophenol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | Removed 3 catalogue altLabel value(s): 'EP 30' (grade code), 'EP 30 (pesticide)' (grade code), 'NSC 263497' (registry code) |
| 337,695 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/6acaf758-e408-… | associations resolved on the elementary layer |
| 389,684 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl5O"],… | typed the way the ontology types it |
| 396,929 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,930 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24127","rdfs:label":"fungicide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/6867 | prefLabel | ef:agent/bootstrap_labels | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v0 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v1 |
| ef:activity/change/20260820T1416470405690000/6868 | name | ef:agent/bootstrap_labels | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v1 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v2 |
| ef:activity/change/20260820T1416470405690000/6869 | synonyms | ef:agent/bootstrap_labels | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v2 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v3 |
| ef:activity/change/20260820T1416470405690000/113352 | context | ef:agent/default_context_mapping | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v3 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v4 |
| ef:activity/change/20260820T1416470405690000/113353 | context_iri | ef:agent/default_context_mapping | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v4 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v5 |
| ef:activity/change/20260820T1416470405690000/215637 | unit_iri | ef:agent/unit_normalization | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v5 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v6 |
| ef:activity/change/20260820T1416470405690000/222677 | prefLabel | ef:agent/normalize_name_case | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v6 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v7 |
| ef:activity/change/20260820T1416470405690000/226795 | ec_numbers | ef:agent/ec_cross_check | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v7 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v8 |
| ef:activity/change/20260820T1416470405690000/233778 | properties | ef:agent/enrich_references | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v8 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v9 |
| ef:activity/change/20260820T1416470405690000/233779 | skos_definition | ef:agent/enrich_references | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v9 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v10 |
| ef:activity/change/20260820T1416470405690000/233780 | references | ef:agent/enrich_references | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v10 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v11 |
| ef:activity/change/20260820T1416470405690000/250225 | properties | ef:agent/rdkit_pre_consensus | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v11 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v12 |
| ef:activity/change/20260820T1416470405690000/255240 | altLabel | ef:agent/chebi_altlabels | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v12 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v13 |
| ef:activity/change/20260820T1416470405690000/270443 | altLabel | ef:agent/consensus_match | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v13 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v14 |
| ef:activity/change/20260820T1416470405690000/270444 | cas_match_labels | ef:agent/consensus_match | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v14 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v15 |
| ef:activity/change/20260820T1416470405690000/275380 | properties | ef:agent/opsin_iupac | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v15 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v16 |
| ef:activity/change/20260820T1416470405690000/281888 | properties | ef:agent/rdkit_post_consensus | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v16 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v17 |
| ef:activity/change/20260820T1416470405690000/288678 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v17 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v18 |
| ef:activity/change/20260820T1416470405690000/337695 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v18 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v19 |
| ef:activity/change/20260820T1416470405690000/389684 | properties | ef:agent/normalise_property_values | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v19 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v20 |
| ef:activity/change/20260820T1416470405690000/396929 | types | ef:agent/link_flows_to_their_substance | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v20 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v21 |
| ef:activity/change/20260820T1416470405690000/396930 | roles | ef:agent/link_flows_to_their_substance | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v21 | ef:flow/6acaf758-e408-411b-a5c5-5ebaa4854c8f/v22 |