Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass typed the way the ontology types it
altLabel 3 consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=16039-53-5; cc_chebi_agreed_name='Zinc lactate'; object_uuid=fo-2a6b25cc76e799e8
cas_match_labels 1 consensus_match group_key=zincbis(2-hydroxypropanoate)||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'16039-53-5': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-2a6b25cc76e799e8: {'16039-53-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['16039-53-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_81053']; candidate_pubchem_cids=[27653, 3007856, 4307909, 25199573, 91886529, 102600802, 122130874, 131849188, 176448679]; selected_pubchem_cids=[27653]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
19,208 bootstrap_labels prefLabel [{"@value":"zinc bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… Bootstrapped prefLabel from legacy name field
19,209 bootstrap_labels name zinc bis(2-hydroxypropanoate) Purged legacy name field to enforce prefLabel usage
19,210 bootstrap_labels synonyms ["organometallic","zincdilactate"] [] Removed legacy synonyms field in favor of structured labels
114,060 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
114,061 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
219,597 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,462 normalize_name_case prefLabel [{"@value":"zinc bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
245,052 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
245,053 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
245,054 enrich_references references [] [{"@id":"https://chem.echa.europa.eu/100.025.614","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… Added references with provenance; cas_numbers=['16039-53-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_81053']; candidate_pubchem_cids=[27653, 3007856, 4307909, 25199573, 91886529, 102600802, 122130874, 131849188, 176448679]; selected_pubchem_cids=[27653]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,465 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… rdkit_pre_consensus from 'CC(C(=O)O)O.CC(C(=O)O)O.[Zn]'; added: molecular_mass, monoisotopic_mass
273,309 consensus_match prefLabel [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… [{"@value":"Zinc lactate","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"co… cas=16039-53-5; cc_chebi_agreed_name='Zinc lactate'; object_uuid=fo-2a6b25cc76e799e8
273,310 consensus_match altLabel [] [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:was… cas=16039-53-5; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-2a6b25cc76e799e8
273,311 consensus_match altLabel [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:was… [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:was… group_key=zincbis(2-hydroxypropanoate)||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=16039-53-5; added Common Chemistry CAS names as altLabel: (<em>T</em>-4)-Bis[2-(hydroxy-κ<em>O</em>)propanoato-κ<em>O</em>]zinc, Propanoic acid, 2-hydroxy-, zinc complex, Zinc di(2-hydroxypropionate), Zinc, bis(2-hydroxypropanoato-<em>O</em><sup>1</sup>,<em>O</em><sup>2</sup>)-, (<em>T</em>-4)-, Zinc, bis(lactato)-, Zinc, bis[2-(hydroxy-κ<em>O</em>)propanoato-κ<em>O</em>]-, (<em>T</em>-4)-, purAMEX ZN; object_uuid=fo-2a6b25cc76e799e8
273,312 consensus_match cas_match_labels {"16039-53-5":"exactMatch"} group_key=zincbis(2-hydroxypropanoate)||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'16039-53-5': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-2a6b25cc76e799e8: {'16039-53-5': 'exactMatch'}
278,679 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Zinc lactate'
285,459 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… rdkit_post_consensus from 'CC(O)C(=O)[O-].CC(O)C(=O)[O-].[Zn+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,144 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
293,018 dedupe_altlabels altLabel [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:was… [{"@value":"Zinc Bis(2-hydroxypropanoate)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:was… Deduplicated altLabel values and removed entries matching prefLabel
338,027 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/6bef0caf-c531-… associations resolved on the elementary layer
393,046 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H10O6Zn"… typed the way the ontology types it
401,809 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalSalt"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1122181958110000/19208 prefLabel ef:agent/bootstrap_labels ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v0 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v1
ef:activity/change/20260821T1122181958110000/19209 name ef:agent/bootstrap_labels ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v1 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v2
ef:activity/change/20260821T1122181958110000/19210 synonyms ef:agent/bootstrap_labels ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v2 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v3
ef:activity/change/20260821T1122181958110000/114060 context ef:agent/default_context_mapping ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v3 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v4
ef:activity/change/20260821T1122181958110000/114061 context_iri ef:agent/default_context_mapping ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v4 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v5
ef:activity/change/20260821T1122181958110000/219597 unit_iri ef:agent/unit_normalization ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v5 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v6
ef:activity/change/20260821T1122181958110000/225462 prefLabel ef:agent/normalize_name_case ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v6 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v7
ef:activity/change/20260821T1122181958110000/245052 properties ef:agent/enrich_references ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v7 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v8
ef:activity/change/20260821T1122181958110000/245053 skos_definition ef:agent/enrich_references ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v8 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v9
ef:activity/change/20260821T1122181958110000/245054 references ef:agent/enrich_references ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v9 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v10
ef:activity/change/20260821T1122181958110000/253465 properties ef:agent/rdkit_pre_consensus ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v10 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v11
ef:activity/change/20260821T1122181958110000/273309 prefLabel ef:agent/consensus_match ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v11 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v12
ef:activity/change/20260821T1122181958110000/273310 altLabel ef:agent/consensus_match ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v12 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v13
ef:activity/change/20260821T1122181958110000/273311 altLabel ef:agent/consensus_match ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v13 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v14
ef:activity/change/20260821T1122181958110000/273312 cas_match_labels ef:agent/consensus_match ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v14 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v15
ef:activity/change/20260821T1122181958110000/278679 properties ef:agent/opsin_iupac ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v15 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v16
ef:activity/change/20260821T1122181958110000/285459 properties ef:agent/rdkit_post_consensus ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v16 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v17
ef:activity/change/20260821T1122181958110000/287144 properties ef:agent/withhold_ambiguous_mass ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v17 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v18
ef:activity/change/20260821T1122181958110000/293018 altLabel ef:agent/dedupe_altlabels ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v18 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v19
ef:activity/change/20260821T1122181958110000/338027 concept_associations ef:agent/carry_associations_onto_flows ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v19 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v20
ef:activity/change/20260821T1122181958110000/393046 properties ef:agent/normalise_property_values ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v20 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v21
ef:activity/change/20260821T1122181958110000/401809 types ef:agent/link_flows_to_their_substance ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v21 ef:flow/6bef0caf-c531-42c4-b126-eae198770378/v22

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