Josamycin
Everything that changed this flow. Back to the flow
7127b36a-e42d-4a13-8577-fb483dd7bbdb
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'EN 141' (grade code), 'EN-141' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=josamycin||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'16846-24-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5f66bcdc66916521: {'16846-24-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['16846-24-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31739']; candidate_pubchem_cids=[3804, 28107, 5282165, 5284579, 5458219, 5474986, 6419972, 6604350, 23817954, 24140143, 24871045, 44134787, 71312234, 126969097, 131849444, 134692189, 137706167, 154825561, 163199195, 166639218, 168013303]; selected_pubchem_cids=[5282165]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 20,826 | bootstrap_labels | prefLabel | — | [{"@value":"josamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 20,827 | bootstrap_labels | name | josamycin | — | Purged legacy name field to enforce prefLabel usage |
| 20,828 | bootstrap_labels | synonyms | ["organic","josamycin"] | [] | Removed legacy synonyms field in favor of structured labels |
| 117,142 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 117,143 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 220,063 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,808 | normalize_name_case | prefLabel | [{"@value":"josamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Josamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,360 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,361 | enrich_references | skos_definition | — | [{"@value":"A macrolide antibiotic produced by certain strains of Streptomyces narbonensis var. josamyceticus.","@langu… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,362 | enrich_references | references | [] | [{"@id":"drugcentral:1518","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['16846-24-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31739']; candidate_pubchem_cids=[3804, 28107, 5282165, 5284579, 5458219, 5474986, 6419972, 6604350, 23817954, 24140143, 24871045, 44134787, 71312234, 126969097, 131849444, 134692189, 137706167, 154825561, 163199195, 166639218, 168013303]; selected_pubchem_cids=[5282165]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,851 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | rdkit_pre_consensus from 'CC1CC=CC=CC(C(CC(C(C(C(CC(=O)O1)OC(=O)C)OC)OC2C(C(C(C(O2)C)OC3CC(C(C(O3)C)OC(=O)CC(C)C)(C)O)N(C)C)O)CC=O)C)O'; added: inchi2d_string, monoisotopic_mass |
| 257,037 | chebi_altlabels | altLabel | [] | [{"@value":"EN-141","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,245 | consensus_match | altLabel | [{"@value":"EN-141","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | [{"@value":"EN-141","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | group_key=josamycin||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=16846-24-5; added Common Chemistry CAS names as altLabel: Antibiotic YL 704A<sub>3</sub>, EN 141, Iosalide, Jomybel, Josacine, Josamina, Leucomycin V, 3-acetate 4<sup>B</sup>-(3-methylbutanoate), MeSH ID: D015570, Oxacyclohexadecane, leucomycin V deriv., Vilprafen, Wilprafen; object_uuid=fo-5f66bcdc66916521 |
| 268,246 | consensus_match | cas_match_labels | — | {"16846-24-5":"exactMatch"} | group_key=josamycin||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'16846-24-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5f66bcdc66916521: {'16846-24-5': 'exactMatch'} |
| 285,884 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | rdkit_post_consensus from 'CC1CC=CC=CC(C(CC(C(C(C(CC(=O)O1)OC(=O)C)OC)OC2C(C(C(C(O2)C)OC3CC(C(C(O3)C)OC(=O)CC(C)C)(C)O)N(C)C)O)CC=O)C)O'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,386 | strip_catalogue_altlabels | altLabel | [{"@value":"EN-141","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… | [{"@value":"JM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Removed 2 catalogue altLabel value(s): 'EN 141' (grade code), 'EN-141' (grade code) |
| 339,570 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7127b36a-e42d-… | associations resolved on the elementary layer |
| 393,436 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | typed the way the ontology types it |
| 402,388 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,389 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C42H69NO15… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/20826 | prefLabel | ef:agent/bootstrap_labels | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v0 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v1 |
| ef:activity/change/20260822T0600486828500000/20827 | name | ef:agent/bootstrap_labels | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v1 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v2 |
| ef:activity/change/20260822T0600486828500000/20828 | synonyms | ef:agent/bootstrap_labels | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v2 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v3 |
| ef:activity/change/20260822T0600486828500000/117142 | context | ef:agent/default_context_mapping | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v3 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v4 |
| ef:activity/change/20260822T0600486828500000/117143 | context_iri | ef:agent/default_context_mapping | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v4 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v5 |
| ef:activity/change/20260822T0600486828500000/220063 | unit_iri | ef:agent/unit_normalization | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v5 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v6 |
| ef:activity/change/20260822T0600486828500000/225808 | prefLabel | ef:agent/normalize_name_case | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v6 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v7 |
| ef:activity/change/20260822T0600486828500000/246360 | properties | ef:agent/enrich_references | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v7 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v8 |
| ef:activity/change/20260822T0600486828500000/246361 | skos_definition | ef:agent/enrich_references | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v8 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v9 |
| ef:activity/change/20260822T0600486828500000/246362 | references | ef:agent/enrich_references | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v9 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v10 |
| ef:activity/change/20260822T0600486828500000/253851 | properties | ef:agent/rdkit_pre_consensus | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v10 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v11 |
| ef:activity/change/20260822T0600486828500000/257037 | altLabel | ef:agent/chebi_altlabels | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v11 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v12 |
| ef:activity/change/20260822T0600486828500000/268245 | altLabel | ef:agent/consensus_match | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v12 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v13 |
| ef:activity/change/20260822T0600486828500000/268246 | cas_match_labels | ef:agent/consensus_match | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v13 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v14 |
| ef:activity/change/20260822T0600486828500000/285884 | properties | ef:agent/rdkit_post_consensus | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v14 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v15 |
| ef:activity/change/20260822T0600486828500000/291386 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v15 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v16 |
| ef:activity/change/20260822T0600486828500000/339570 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v16 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v17 |
| ef:activity/change/20260822T0600486828500000/393436 | properties | ef:agent/normalise_property_values | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v17 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v18 |
| ef:activity/change/20260822T0600486828500000/402388 | types | ef:agent/link_flows_to_their_substance | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v18 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v19 |
| ef:activity/change/20260822T0600486828500000/402389 | properties | ef:agent/link_flows_to_their_substance | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v19 | ef:flow/7127b36a-e42d-4a13-8577-fb483dd7bbdb/v20 |