Thymol
Everything that changed this flow. Back to the flow
72ec7d3f-0eac-4b33-a814-0602ea9ec25e
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 4 catalogue altLabel value(s): 'NSC 11215' (registry code), 'NSC 47821' (registry code), 'NSC 49142' (registry code), 'T 0501' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=thymol||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'89-83-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-eef47293fb03707d: {'89-83-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['89-83-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_133663', 'http://purl.obolibrary.org/obo/CHEBI_27607']; candidate_pubchem_cids=[1254, 6989, 15523, 267769, 23295735, 78145917]; selected_pubchem_cids=[6989]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 3,986 | bootstrap_labels | prefLabel | — | [{"@value":"thymol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 3,987 | bootstrap_labels | name | thymol | — | Purged legacy name field to enforce prefLabel usage |
| 16,661 | bootstrap_labels | synonyms | ["1-Hydroxy-5-methyl-2-isopropylbenzene","1-Methyl-3-hydroxy-4-isopropylbenzene","1e06","2-Hydroxy-1-isopropyl-4-methyl… | [] | Removed legacy synonyms field in favor of structured labels |
| 118,176 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 118,177 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 214,672 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,006 | normalize_name_case | prefLabel | [{"@value":"thymol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Thymol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,021 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 231,022 | enrich_references | skos_definition | — | [{"@value":"A phenol that is a natural monoterpene derivative of cymene.","@language":"en","provenance":{"prov:wasGener… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,023 | enrich_references | references | [] | [{"@id":"bpdb:1889","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['89-83-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_133663', 'http://purl.obolibrary.org/obo/CHEBI_27607']; candidate_pubchem_cids=[1254, 6989, 15523, 267769, 23295735, 78145917]; selected_pubchem_cids=[6989]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,424 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | rdkit_pre_consensus from 'CC1=CC(=C(C=C1)C(C)C)O'; added: monoisotopic_mass |
| 254,888 | chebi_altlabels | altLabel | [] | [{"@value":"1-hydroxy-5-methyl-2-isopropylbenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Added 10 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 272,624 | consensus_match | altLabel | [{"@value":"1-hydroxy-5-methyl-2-isopropylbenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"1-hydroxy-5-methyl-2-isopropylbenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | group_key=thymol||dimension=Environmental > media=Air > indoor=Unknown; cas=89-83-8; added Common Chemistry CAS names as altLabel: 1-Methyl-3-hydroxy-4-isopropylbenzene, 2-Hydroxy-1-isopropyl-4-methylbenzene, 3-Hydroxy-<em>p</em>-cymene, 3-Methyl-6-isopropylphenol, 5-Methyl-2-isopropyl-1-phenol, 5-Methyl-2-propan-2-ylphenol, <em>m</em>-Thymol, <em>p</em>-Cymen-3-ol, Apiguard, Marukarep RM, MeSH ID: D013943, NSC 11215, NSC 47821, NSC 49142, Phenol, 5-methyl-2-(1-methylethyl)-, T 0501, Thyme camphor, Thymol Chrystals; object_uuid=fo-eef47293fb03707d |
| 272,625 | consensus_match | cas_match_labels | — | {"89-83-8":"exactMatch"} | group_key=thymol||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'89-83-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-eef47293fb03707d: {'89-83-8': 'exactMatch'} |
| 274,555 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Thymol' |
| 281,003 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | rdkit_post_consensus from 'Cc1ccc(C(C)C)c(O)c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 286,794 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 288,072 | strip_catalogue_altlabels | altLabel | [{"@value":"1-hydroxy-5-methyl-2-isopropylbenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"1-hydroxy-5-methyl-2-isopropylbenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Removed 4 catalogue altLabel value(s): 'NSC 11215' (registry code), 'NSC 47821' (registry code), 'NSC 49142' (registry code), 'T 0501' (grade code) |
| 340,086 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/72ec7d3f-0eac-… | associations resolved on the elementary layer |
| 388,859 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13O4S"… | typed the way the ontology types it |
| 395,771 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/3986 | prefLabel | ef:agent/bootstrap_labels | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v0 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v1 |
| ef:activity/change/20260821T1554374006150000/3987 | name | ef:agent/bootstrap_labels | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v1 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v2 |
| ef:activity/change/20260821T1554374006150000/16661 | synonyms | ef:agent/bootstrap_labels | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v2 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v3 |
| ef:activity/change/20260821T1554374006150000/118176 | context | ef:agent/default_context_mapping | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v3 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v4 |
| ef:activity/change/20260821T1554374006150000/118177 | context_iri | ef:agent/default_context_mapping | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v4 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v5 |
| ef:activity/change/20260821T1554374006150000/214672 | unit_iri | ef:agent/unit_normalization | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v5 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v6 |
| ef:activity/change/20260821T1554374006150000/222006 | prefLabel | ef:agent/normalize_name_case | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v6 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v7 |
| ef:activity/change/20260821T1554374006150000/231021 | properties | ef:agent/enrich_references | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v7 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v8 |
| ef:activity/change/20260821T1554374006150000/231022 | skos_definition | ef:agent/enrich_references | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v8 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v9 |
| ef:activity/change/20260821T1554374006150000/231023 | references | ef:agent/enrich_references | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v9 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v10 |
| ef:activity/change/20260821T1554374006150000/249424 | properties | ef:agent/rdkit_pre_consensus | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v10 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v11 |
| ef:activity/change/20260821T1554374006150000/254888 | altLabel | ef:agent/chebi_altlabels | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v11 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v12 |
| ef:activity/change/20260821T1554374006150000/272624 | altLabel | ef:agent/consensus_match | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v12 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v13 |
| ef:activity/change/20260821T1554374006150000/272625 | cas_match_labels | ef:agent/consensus_match | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v13 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v14 |
| ef:activity/change/20260821T1554374006150000/274555 | properties | ef:agent/opsin_iupac | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v14 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v15 |
| ef:activity/change/20260821T1554374006150000/281003 | properties | ef:agent/rdkit_post_consensus | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v15 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v16 |
| ef:activity/change/20260821T1554374006150000/286794 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v16 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v17 |
| ef:activity/change/20260821T1554374006150000/288072 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v17 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v18 |
| ef:activity/change/20260821T1554374006150000/340086 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v18 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v19 |
| ef:activity/change/20260821T1554374006150000/388859 | properties | ef:agent/normalise_property_values | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v19 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v20 |
| ef:activity/change/20260821T1554374006150000/395771 | types | ef:agent/link_flows_to_their_substance | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v20 | ef:flow/72ec7d3f-0eac-4b33-a814-0602ea9ec25e/v21 |