Succinic Acid
Everything that changed this flow. Back to the flow
7551b010-923f-430f-9f47-51afb60f8f53
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 4 catalogue altLabel value(s): 'A 12084' (grade code), 'NSC 106449' (registry code), 'NSC 25949' (registry code), 'S 3674' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=succinicacid||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-15-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d04916430a33e46d: {'110-15-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['110-15-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15741']; candidate_pubchem_cids=[1110, 160419, 571807, 21952380]; selected_pubchem_cids=[1110]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 10,531 | bootstrap_labels | prefLabel | — | [{"@value":"succinic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Bootstrapped prefLabel from legacy name field |
| 10,532 | bootstrap_labels | name | succinic acid | — | Purged legacy name field to enforce prefLabel usage |
| 10,533 | bootstrap_labels | synonyms | ["1,2-Ethanedicarboxylic acid","1,4-BUTANEDIOIC ACID (SUCCINIC ACID)","1,4-Butanedioic acid","1cze","A 12084","AC1L1AQW… | [] | Removed legacy synonyms field in favor of structured labels |
| 119,640 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 119,641 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 216,833 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,560 | normalize_name_case | prefLabel | [{"@value":"succinic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Succinic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 237,210 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 237,211 | enrich_references | skos_definition | — | [{"@value":"An α,ω-dicarboxylic acid resulting from the formal oxidation of each of the terminal methyl groups of butan… | Merged ChEBI/PubChem definitions into skos:definition |
| 237,212 | enrich_references | references | [] | [{"@id":"drugcentral:2487","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['110-15-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15741']; candidate_pubchem_cids=[1110, 160419, 571807, 21952380]; selected_pubchem_cids=[1110]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,192 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | rdkit_pre_consensus from 'C(CC(=O)O)C(=O)O'; added: monoisotopic_mass |
| 255,875 | chebi_altlabels | altLabel | [] | [{"@value":"1,2-ethanedicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | Added 15 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,134 | consensus_match | altLabel | [{"@value":"1,2-ethanedicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | [{"@value":"1,2-ethanedicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | group_key=succinicacid||dimension=Environmental > media=Ground > geography=Unknown; cas=110-15-6; added Common Chemistry CAS names as altLabel: 1,4-Butanedioic acid, A 12084, Biosuccinium, Biosuccinium SA, Katasuccin, MeSH ID: D019802, NSC 106449, NSC 25949, S 3674, Wormwood acid, Yantar-antitox; object_uuid=fo-d04916430a33e46d |
| 272,135 | consensus_match | cas_match_labels | — | {"110-15-6":"exactMatch"} | group_key=succinicacid||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-15-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d04916430a33e46d: {'110-15-6': 'exactMatch'} |
| 276,377 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Succinic Acid' |
| 282,977 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | rdkit_post_consensus from 'O=C(O)CCC(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,452 | strip_catalogue_altlabels | altLabel | [{"@value":"1,2-ethanedicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | [{"@value":"1,2-ethanedicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAt… | Removed 4 catalogue altLabel value(s): 'A 12084' (grade code), 'NSC 106449' (registry code), 'NSC 25949' (registry code), 'S 3674' (grade code) |
| 340,818 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7551b010-923f-… | associations resolved on the elementary layer |
| 390,729 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O4"],"… | typed the way the ontology types it |
| 398,479 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1302361922970000/10531 | prefLabel | ef:agent/bootstrap_labels | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v0 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v1 |
| ef:activity/change/20260821T1302361922970000/10532 | name | ef:agent/bootstrap_labels | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v1 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v2 |
| ef:activity/change/20260821T1302361922970000/10533 | synonyms | ef:agent/bootstrap_labels | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v2 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v3 |
| ef:activity/change/20260821T1302361922970000/119640 | context | ef:agent/default_context_mapping | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v3 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v4 |
| ef:activity/change/20260821T1302361922970000/119641 | context_iri | ef:agent/default_context_mapping | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v4 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v5 |
| ef:activity/change/20260821T1302361922970000/216833 | unit_iri | ef:agent/unit_normalization | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v5 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v6 |
| ef:activity/change/20260821T1302361922970000/223560 | prefLabel | ef:agent/normalize_name_case | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v6 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v7 |
| ef:activity/change/20260821T1302361922970000/237210 | properties | ef:agent/enrich_references | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v7 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v8 |
| ef:activity/change/20260821T1302361922970000/237211 | skos_definition | ef:agent/enrich_references | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v8 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v9 |
| ef:activity/change/20260821T1302361922970000/237212 | references | ef:agent/enrich_references | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v9 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v10 |
| ef:activity/change/20260821T1302361922970000/251192 | properties | ef:agent/rdkit_pre_consensus | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v10 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v11 |
| ef:activity/change/20260821T1302361922970000/255875 | altLabel | ef:agent/chebi_altlabels | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v11 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v12 |
| ef:activity/change/20260821T1302361922970000/272134 | altLabel | ef:agent/consensus_match | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v12 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v13 |
| ef:activity/change/20260821T1302361922970000/272135 | cas_match_labels | ef:agent/consensus_match | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v13 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v14 |
| ef:activity/change/20260821T1302361922970000/276377 | properties | ef:agent/opsin_iupac | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v14 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v15 |
| ef:activity/change/20260821T1302361922970000/282977 | properties | ef:agent/rdkit_post_consensus | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v15 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v16 |
| ef:activity/change/20260821T1302361922970000/289452 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v16 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v17 |
| ef:activity/change/20260821T1302361922970000/340818 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v17 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v18 |
| ef:activity/change/20260821T1302361922970000/390729 | properties | ef:agent/normalise_property_values | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v18 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v19 |
| ef:activity/change/20260821T1302361922970000/398479 | types | ef:agent/link_flows_to_their_substance | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v19 | ef:flow/7551b010-923f-430f-9f47-51afb60f8f53/v20 |