Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 7 catalogue altLabel value(s): 'AA 2500' (grade code), 'Andro 100' (trade name), 'CDB 111C' (grade code), 'COL 1621' (grade code), 'CP 601B' (grade code), 'LPCN 1144' (grade code), 'NSC 9700' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=testosterone||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'58-22-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-35e94c805d398df4: {'58-22-0': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['58-22-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17347']; candidate_pubchem_cids=[5408, 6013, 92456, 5701998, 6432567, 11870497, 12304592, 12304601, 19615208, 49849358, 87229213, 169544695]; selected_pubchem_cids=[6013]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
12,520 bootstrap_labels prefLabel [{"@value":"testosterone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
12,521 bootstrap_labels name testosterone Purged legacy name field to enforce prefLabel usage
22,911 bootstrap_labels synonyms ["testosterone","testosterone [ban:inn]","androst-4-en-3-one, 17-hydroxy-, (17?)-","(17beta)-17-hydroxyandrost-4-en-3-o… [] Removed legacy synonyms field in favor of structured labels
122,384 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
122,385 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
217,482 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,994 normalize_name_case prefLabel [{"@value":"testosterone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Testosterone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
239,073 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
239,074 enrich_references skos_definition [{"@value":"An androstanoid having 17β-hydroxy and 3-oxo groups, together with unsaturation at C-4‒C-5..","@language":"… Merged ChEBI/PubChem definitions into skos:definition
239,075 enrich_references references [] [{"@id":"beilstein:3653705","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['58-22-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17347']; candidate_pubchem_cids=[5408, 6013, 92456, 5701998, 6432567, 11870497, 12304592, 12304601, 19615208, 49849358, 87229213, 169544695]; selected_pubchem_cids=[6013]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
251,735 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… rdkit_pre_consensus from 'CC12CCC3C(C1CCC2O)CCC4=CC(=O)CCC34C'; added: inchi2d_string
256,101 chebi_altlabels altLabel [] [{"@value":"17beta-Hydroxy-4-androsten-3-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,340 consensus_match altLabel [{"@value":"17beta-Hydroxy-4-androsten-3-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… [{"@value":"17beta-Hydroxy-4-androsten-3-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… group_key=testosterone||dimension=Environmental > media=Water > water_body=Unknown; cas=58-22-0; added Common Chemistry CAS names as altLabel: (+)-Testosterone, (17β)-17-Hydroxyandrost-4-en-3-one, (8R,9S,10R,13S,14S,17S)-17-Hydroxy-10,13-dimethyl-6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-1<em>H</em>-cyclopenta[<em>a</em>]phenanthren-3(2<em>H</em>)-one, 17β-Hydroxy-Δ<sup>4</sup>-androsten-3-one, 17β-Hydroxyandrost-4-en-3-one, 17β-Hydroxyandrost-4-ene-3-one, 17β-Testosterone, 4-Androsten-3-one-17β-ol, AA 2500, Andro 100, AndroForte 5, AndroGel, Androlin, Andronaq, Andropatch, Androst-4-en-17β-ol-3-one, Androst-4-en-3-one, 17-hydroxy-, (17β)-, Androst-4-ene-17β-ol-3-one, Andrusol, Axiron, CDB 111C, COL 1621, CP 601B, Compleo, Cristerona T, Geno-cristaux Gremy, Glowmin, Homosteron, Homosterone, Intrinsa, LPCN 1144, Livensa, MeSH ID: D013739, Mertestate, NSC 9700, Nasobol, Natesto, Neotestis, Noseafix, Opterone, Oreton, Orquisteron, Perandren, Percutacrine androgenique, Primotest, Primoteston, Relibra, Striant, Synandrol F, Teslen, Testandrone, Testiculosterone, Testim, Testobase, Testoderm, Testogel, Testolent, Testolin, Testopatch, Testopel, Testopropon, Testosteroid, Testoviron Schering, Testoviron T, Testro AQ, Testrone, Testryl, Tostrelle, Tostrex, Viatrel, Virormone, Virosterone, Δ<sup>4</sup>-Androsten-17β-ol-3-one; object_uuid=fo-35e94c805d398df4
272,341 consensus_match cas_match_labels {"58-22-0":"exactMatch"} group_key=testosterone||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'58-22-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-35e94c805d398df4: {'58-22-0': 'exactMatch'}
276,922 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '17beta-Hydroxy-4-androsten-3-one'
283,570 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… rdkit_post_consensus from 'C[C@]12CC[C@H]3[C@@H](CCC4=CC(=O)CC[C@@]43C)[C@@H]1CC[C@@H]2O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,836 strip_catalogue_altlabels altLabel [{"@value":"17beta-Hydroxy-4-androsten-3-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… [{"@value":"17beta-Hydroxy-4-androsten-3-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… Removed 7 catalogue altLabel value(s): 'AA 2500' (grade code), 'Andro 100' (trade name), 'CDB 111C' (grade code), 'COL 1621' (grade code), 'CP 601B' (grade code), 'LPCN 1144' (grade code), 'NSC 9700' (registry code)
342,190 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7a2520b7-c8b8-… associations resolved on the elementary layer
391,278 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… typed the way the ontology types it
399,243 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
399,244 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H28O2"]… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1302361922970000/12520 prefLabel ef:agent/bootstrap_labels ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v0 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v1
ef:activity/change/20260821T1302361922970000/12521 name ef:agent/bootstrap_labels ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v1 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v2
ef:activity/change/20260821T1302361922970000/22911 synonyms ef:agent/bootstrap_labels ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v2 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v3
ef:activity/change/20260821T1302361922970000/122384 context ef:agent/default_context_mapping ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v3 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v4
ef:activity/change/20260821T1302361922970000/122385 context_iri ef:agent/default_context_mapping ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v4 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v5
ef:activity/change/20260821T1302361922970000/217482 unit_iri ef:agent/unit_normalization ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v5 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v6
ef:activity/change/20260821T1302361922970000/223994 prefLabel ef:agent/normalize_name_case ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v6 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v7
ef:activity/change/20260821T1302361922970000/239073 properties ef:agent/enrich_references ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v7 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v8
ef:activity/change/20260821T1302361922970000/239074 skos_definition ef:agent/enrich_references ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v8 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v9
ef:activity/change/20260821T1302361922970000/239075 references ef:agent/enrich_references ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v9 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v10
ef:activity/change/20260821T1302361922970000/251735 properties ef:agent/rdkit_pre_consensus ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v10 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v11
ef:activity/change/20260821T1302361922970000/256101 altLabel ef:agent/chebi_altlabels ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v11 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v12
ef:activity/change/20260821T1302361922970000/272340 altLabel ef:agent/consensus_match ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v12 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v13
ef:activity/change/20260821T1302361922970000/272341 cas_match_labels ef:agent/consensus_match ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v13 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v14
ef:activity/change/20260821T1302361922970000/276922 properties ef:agent/opsin_iupac ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v14 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v15
ef:activity/change/20260821T1302361922970000/283570 properties ef:agent/rdkit_post_consensus ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v15 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v16
ef:activity/change/20260821T1302361922970000/289836 altLabel ef:agent/strip_catalogue_altlabels ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v16 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v17
ef:activity/change/20260821T1302361922970000/342190 concept_associations ef:agent/carry_associations_onto_flows ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v17 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v18
ef:activity/change/20260821T1302361922970000/391278 properties ef:agent/normalise_property_values ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v18 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v19
ef:activity/change/20260821T1302361922970000/399243 types ef:agent/link_flows_to_their_substance ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v19 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v20
ef:activity/change/20260821T1302361922970000/399244 properties ef:agent/link_flows_to_their_substance ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v20 ef:flow/7a2520b7-c8b8-4800-926c-82f6754c71f6/v21

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