Iron(2+)
Everything that changed this flow. Back to the flow
7d43de14-3a7e-4222-b8ca-d47a5b619016
By field
12 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=15438-31-0; cc_chebi_agreed_name='Iron(2+)'; object_uuid=fo-07c012233936d802 |
| cas_match_labels | 1 | consensus_match | group_key=iron(ii)||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi']; cas_sources={'15438-31-0': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-07c012233936d802: {'15438-31-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['15438-31-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29033']; candidate_pubchem_cids=[27284]; selected_pubchem_cids=[27284]; formula_similarity_expected=['Fe']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 2,249 | bootstrap_labels | prefLabel | — | [{"@value":"iron (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 2,250 | bootstrap_labels | name | iron (ii) | — | Purged legacy name field to enforce prefLabel usage |
| 124,356 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 124,357 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 214,094 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,614 | normalize_name_case | prefLabel | [{"@value":"iron (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Iron (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 229,351 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 229,352 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 229,353 | enrich_references | references | [] | [{"@id":"gmelin:6845","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['15438-31-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29033']; candidate_pubchem_cids=[27284]; selected_pubchem_cids=[27284]; formula_similarity_expected=['Fe']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,637 | chebi_altlabels | altLabel | [] | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,037 | consensus_match | prefLabel | [{"@value":"Iron (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Iron(2+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consen… | cas=15438-31-0; cc_chebi_agreed_name='Iron(2+)'; object_uuid=fo-07c012233936d802 |
| 268,038 | consensus_match | altLabel | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | cas=15438-31-0; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-07c012233936d802 |
| 268,039 | consensus_match | altLabel | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | group_key=iron(ii)||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=15438-31-0; added Common Chemistry CAS names as altLabel: Divalent iron ion, Ferrous cation, Iron (Fe<sup>2+</sup>), Iron dication, Iron divalent ion, Iron(II) ion, Iron, ion (Fe<sup>2+</sup>); object_uuid=fo-07c012233936d802 |
| 268,040 | consensus_match | cas_match_labels | — | {"15438-31-0":"exactMatch"} | group_key=iron(ii)||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi']; cas_sources={'15438-31-0': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-07c012233936d802: {'15438-31-0': 'exactMatch'} |
| 274,084 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Iron(2+)' |
| 280,491 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | rdkit_post_consensus from '[Fe+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,113 | dedupe_altlabels | altLabel | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"FE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Deduplicated altLabel values and removed entries matching prefLabel |
| 343,200 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7d43de14-3a7e-… | associations resolved on the elementary layer |
| 388,375 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | typed the way the ontology types it |
| 395,070 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 395,071 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe","Fe+2"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/2249 | prefLabel | ef:agent/bootstrap_labels | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v0 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v1 |
| ef:activity/change/20260820T0738569779880000/2250 | name | ef:agent/bootstrap_labels | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v1 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v2 |
| ef:activity/change/20260820T0738569779880000/124356 | context | ef:agent/default_context_mapping | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v2 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v3 |
| ef:activity/change/20260820T0738569779880000/124357 | context_iri | ef:agent/default_context_mapping | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v3 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v4 |
| ef:activity/change/20260820T0738569779880000/214094 | unit_iri | ef:agent/unit_normalization | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v4 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v5 |
| ef:activity/change/20260820T0738569779880000/221614 | prefLabel | ef:agent/normalize_name_case | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v5 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v6 |
| ef:activity/change/20260820T0738569779880000/229351 | properties | ef:agent/enrich_references | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v6 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v7 |
| ef:activity/change/20260820T0738569779880000/229352 | skos_definition | ef:agent/enrich_references | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v7 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v8 |
| ef:activity/change/20260820T0738569779880000/229353 | references | ef:agent/enrich_references | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v8 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v9 |
| ef:activity/change/20260820T0738569779880000/254637 | altLabel | ef:agent/chebi_altlabels | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v9 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v10 |
| ef:activity/change/20260820T0738569779880000/268037 | prefLabel | ef:agent/consensus_match | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v10 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v11 |
| ef:activity/change/20260820T0738569779880000/268038 | altLabel | ef:agent/consensus_match | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v11 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v12 |
| ef:activity/change/20260820T0738569779880000/268039 | altLabel | ef:agent/consensus_match | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v12 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v13 |
| ef:activity/change/20260820T0738569779880000/268040 | cas_match_labels | ef:agent/consensus_match | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v13 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v14 |
| ef:activity/change/20260820T0738569779880000/274084 | properties | ef:agent/opsin_iupac | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v14 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v15 |
| ef:activity/change/20260820T0738569779880000/280491 | properties | ef:agent/rdkit_post_consensus | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v15 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v16 |
| ef:activity/change/20260820T0738569779880000/292113 | altLabel | ef:agent/dedupe_altlabels | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v16 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v17 |
| ef:activity/change/20260820T0738569779880000/343200 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v17 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v18 |
| ef:activity/change/20260820T0738569779880000/388375 | properties | ef:agent/normalise_property_values | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v18 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v19 |
| ef:activity/change/20260820T0738569779880000/395070 | types | ef:agent/link_flows_to_their_substance | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v19 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v20 |
| ef:activity/change/20260820T0738569779880000/395071 | properties | ef:agent/link_flows_to_their_substance | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v20 | ef:flow/7d43de14-3a7e-4222-b8ca-d47a5b619016/v21 |