Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'A 0696' (grade code), 'NSC 527913' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=281-23-2; cc_chebi_agreed_name='Adamantane'; object_uuid=fo-f37fb9ed5de3e8d5
cas_match_labels 1 consensus_match group_key=tricyclo[3.3.1.13,7]decane||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'281-23-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f37fb9ed5de3e8d5: {'281-23-2': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['281-23-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_40519']; candidate_pubchem_cids=[9238]; selected_pubchem_cids=[9238]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
2,710 bootstrap_labels prefLabel [{"@value":"tricyclo[3.3.1.13,7]decane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… Bootstrapped prefLabel from legacy name field
2,711 bootstrap_labels name tricyclo[3.3.1.13,7]decane Purged legacy name field to enforce prefLabel usage
20,009 bootstrap_labels synonyms ["A0696","AC1L1SMS","AC1L219E","ADAMANTANE","AKOS000119960","AKOS004908007","Adamantan","Adamantane (8CI)","FT-0083759"… [] Removed legacy synonyms field in favor of structured labels
124,508 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
124,509 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
214,243 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,711 normalize_name_case prefLabel [{"@value":"tricyclo[3.3.1.13,7]decane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… [{"@value":"Tricyclo[3.3.1.13,7]decane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
229,786 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
229,787 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
229,788 enrich_references references [] [{"@id":"beilstein:1901173","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['281-23-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_40519']; candidate_pubchem_cids=[9238]; selected_pubchem_cids=[9238]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,070 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_pre_consensus from 'C1C2CC3CC1CC(C2)C3'; added: monoisotopic_mass
254,689 chebi_altlabels altLabel [] [{"@value":"ADAMANTANE","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,873 consensus_match prefLabel [{"@value":"Tricyclo[3.3.1.13,7]decane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… [{"@value":"Adamantane","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"cons… cas=281-23-2; cc_chebi_agreed_name='Adamantane'; object_uuid=fo-f37fb9ed5de3e8d5
272,874 consensus_match altLabel [{"@value":"ADAMANTANE","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… [{"@value":"Adamantan","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… cas=281-23-2; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-f37fb9ed5de3e8d5
272,875 consensus_match altLabel [{"@value":"Adamantan","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… [{"@value":"Adamantan","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… group_key=tricyclo[3.3.1.13,7]decane||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=281-23-2; added Common Chemistry CAS names as altLabel: A 0696, MeSH ID: D000218, NSC 527913; object_uuid=fo-f37fb9ed5de3e8d5
272,876 consensus_match cas_match_labels {"281-23-2":"exactMatch"} group_key=tricyclo[3.3.1.13,7]decane||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'281-23-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f37fb9ed5de3e8d5: {'281-23-2': 'exactMatch'}
274,190 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Adamantane'
280,610 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_post_consensus from 'C1C2CC3CC1CC(C2)C3'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,792 strip_catalogue_altlabels altLabel [{"@value":"Adamantan","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… [{"@value":"Adamantan","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… Removed 2 catalogue altLabel value(s): 'A 0696' (grade code), 'NSC 527913' (registry code)
343,256 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7d85185e-f5f6-… associations resolved on the elementary layer
388,482 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… typed the way the ontology types it
395,233 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/2710 prefLabel ef:agent/bootstrap_labels ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v0 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v1
ef:activity/change/20260821T1554374006150000/2711 name ef:agent/bootstrap_labels ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v1 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v2
ef:activity/change/20260821T1554374006150000/20009 synonyms ef:agent/bootstrap_labels ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v2 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v3
ef:activity/change/20260821T1554374006150000/124508 context ef:agent/default_context_mapping ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v3 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v4
ef:activity/change/20260821T1554374006150000/124509 context_iri ef:agent/default_context_mapping ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v4 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v5
ef:activity/change/20260821T1554374006150000/214243 unit_iri ef:agent/unit_normalization ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v5 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v6
ef:activity/change/20260821T1554374006150000/221711 prefLabel ef:agent/normalize_name_case ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v6 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v7
ef:activity/change/20260821T1554374006150000/229786 properties ef:agent/enrich_references ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v7 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v8
ef:activity/change/20260821T1554374006150000/229787 skos_definition ef:agent/enrich_references ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v8 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v9
ef:activity/change/20260821T1554374006150000/229788 references ef:agent/enrich_references ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v9 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v10
ef:activity/change/20260821T1554374006150000/249070 properties ef:agent/rdkit_pre_consensus ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v10 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v11
ef:activity/change/20260821T1554374006150000/254689 altLabel ef:agent/chebi_altlabels ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v11 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v12
ef:activity/change/20260821T1554374006150000/272873 prefLabel ef:agent/consensus_match ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v12 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v13
ef:activity/change/20260821T1554374006150000/272874 altLabel ef:agent/consensus_match ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v13 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v14
ef:activity/change/20260821T1554374006150000/272875 altLabel ef:agent/consensus_match ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v14 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v15
ef:activity/change/20260821T1554374006150000/272876 cas_match_labels ef:agent/consensus_match ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v15 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v16
ef:activity/change/20260821T1554374006150000/274190 properties ef:agent/opsin_iupac ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v16 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v17
ef:activity/change/20260821T1554374006150000/280610 properties ef:agent/rdkit_post_consensus ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v17 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v18
ef:activity/change/20260821T1554374006150000/287792 altLabel ef:agent/strip_catalogue_altlabels ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v18 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v19
ef:activity/change/20260821T1554374006150000/343256 concept_associations ef:agent/carry_associations_onto_flows ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v19 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v20
ef:activity/change/20260821T1554374006150000/388482 properties ef:agent/normalise_property_values ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v20 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v21
ef:activity/change/20260821T1554374006150000/395233 types ef:agent/link_flows_to_their_substance ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v21 ef:flow/7d85185e-f5f6-4a95-81b8-4517d9ab6d7d/v22

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