Phenanthridine
Everything that changed this flow. Back to the flow
7fdf607c-d9fc-4853-b5a9-32f4a14c6c81
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'NSC 338473' (registry code), 'NSC 73482' (registry code), 'NSC 93336' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=phenanthridine||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'229-87-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-51b33a807696e6d2: {'229-87-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['229-87-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_36421']; candidate_pubchem_cids=[9189]; selected_pubchem_cids=[9189]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,354 | bootstrap_labels | prefLabel | — | [{"@value":"phenanthridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 19,355 | bootstrap_labels | name | phenanthridine | — | Purged legacy name field to enforce prefLabel usage |
| 19,356 | bootstrap_labels | synonyms | ["3,4-Benzoisoquinoline","3,4-Benzoquinoline","5-Azaphenanthrene","6-Phenanthridine","9-Azaphenanthrene","AC-907/250143… | [] | Removed legacy synonyms field in favor of structured labels |
| 125,816 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 125,817 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 219,642 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,492 | normalize_name_case | prefLabel | [{"@value":"phenanthridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Phenanthridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 245,178 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,179 | enrich_references | skos_definition | — | [{"@value":"An azaarene that is the 9-aza derivative of phenanthrene. The parent of the class of phenanthridines.","@la… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,180 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J45.283A","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['229-87-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_36421']; candidate_pubchem_cids=[9189]; selected_pubchem_cids=[9189]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,503 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | rdkit_pre_consensus from 'C1=CC=C2C(=C1)C=NC3=CC=CC=C23'; added: monoisotopic_mass |
| 256,892 | chebi_altlabels | altLabel | [] | [{"@value":"3,4-benzoisoquinoline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,574 | consensus_match | altLabel | [{"@value":"3,4-benzoisoquinoline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… | [{"@value":"3,4-benzoisoquinoline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… | group_key=phenanthridine||dimension=Environmental > media=Water > water_body=Ocean; cas=229-87-8; added Common Chemistry CAS names as altLabel: 5-Azaphenanthrene, NSC 338473, NSC 73482, NSC 93336; object_uuid=fo-51b33a807696e6d2 |
| 270,575 | consensus_match | cas_match_labels | — | {"229-87-8":"exactMatch"} | group_key=phenanthridine||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'229-87-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-51b33a807696e6d2: {'229-87-8': 'exactMatch'} |
| 278,719 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Phenanthridine' |
| 285,502 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | rdkit_post_consensus from 'c1ccc2c(c1)cnc1ccccc12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,147 | strip_catalogue_altlabels | altLabel | [{"@value":"3,4-benzoisoquinoline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… | [{"@value":"3,4-benzoisoquinoline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribut… | Removed 3 catalogue altLabel value(s): 'NSC 338473' (registry code), 'NSC 73482' (registry code), 'NSC 93336' (registry code) |
| 343,910 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/7fdf607c-d9fc-… | associations resolved on the elementary layer |
| 393,087 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H9N"],"… | typed the way the ontology types it |
| 401,863 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/19354 | prefLabel | ef:agent/bootstrap_labels | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v0 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v1 |
| ef:activity/change/20260821T1554374006150000/19355 | name | ef:agent/bootstrap_labels | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v1 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v2 |
| ef:activity/change/20260821T1554374006150000/19356 | synonyms | ef:agent/bootstrap_labels | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v2 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v3 |
| ef:activity/change/20260821T1554374006150000/125816 | context | ef:agent/default_context_mapping | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v3 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v4 |
| ef:activity/change/20260821T1554374006150000/125817 | context_iri | ef:agent/default_context_mapping | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v4 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v5 |
| ef:activity/change/20260821T1554374006150000/219642 | unit_iri | ef:agent/unit_normalization | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v5 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v6 |
| ef:activity/change/20260821T1554374006150000/225492 | prefLabel | ef:agent/normalize_name_case | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v6 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v7 |
| ef:activity/change/20260821T1554374006150000/245178 | properties | ef:agent/enrich_references | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v7 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v8 |
| ef:activity/change/20260821T1554374006150000/245179 | skos_definition | ef:agent/enrich_references | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v8 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v9 |
| ef:activity/change/20260821T1554374006150000/245180 | references | ef:agent/enrich_references | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v9 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v10 |
| ef:activity/change/20260821T1554374006150000/253503 | properties | ef:agent/rdkit_pre_consensus | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v10 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v11 |
| ef:activity/change/20260821T1554374006150000/256892 | altLabel | ef:agent/chebi_altlabels | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v11 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v12 |
| ef:activity/change/20260821T1554374006150000/270574 | altLabel | ef:agent/consensus_match | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v12 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v13 |
| ef:activity/change/20260821T1554374006150000/270575 | cas_match_labels | ef:agent/consensus_match | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v13 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v14 |
| ef:activity/change/20260821T1554374006150000/278719 | properties | ef:agent/opsin_iupac | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v14 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v15 |
| ef:activity/change/20260821T1554374006150000/285502 | properties | ef:agent/rdkit_post_consensus | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v15 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v16 |
| ef:activity/change/20260821T1554374006150000/291147 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v16 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v17 |
| ef:activity/change/20260821T1554374006150000/343910 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v17 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v18 |
| ef:activity/change/20260821T1554374006150000/393087 | properties | ef:agent/normalise_property_values | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v18 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v19 |
| ef:activity/change/20260821T1554374006150000/401863 | types | ef:agent/link_flows_to_their_substance | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v19 | ef:flow/7fdf607c-d9fc-4853-b5a9-32f4a14c6c81/v20 |