L-proline
Everything that changed this flow. Back to the flow
825bc088-f9ad-4045-90bb-dcc8aba25593
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 46703' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=l-proline||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'147-85-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ee3810bffeb21468: {'147-85-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['147-85-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17203']; candidate_pubchem_cids=[614, 887, 8988, 12127, 145742, 6971047]; selected_pubchem_cids=[145742]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 6,097 | bootstrap_labels | prefLabel | — | [{"@value":"l-proline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 6,098 | bootstrap_labels | name | l-proline | — | Purged legacy name field to enforce prefLabel usage |
| 6,099 | bootstrap_labels | synonyms | ["organic","l-proline"] | [] | Removed legacy synonyms field in favor of structured labels |
| 127,292 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 127,293 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 215,377 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,502 | normalize_name_case | prefLabel | [{"@value":"l-proline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"L-proline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 233,044 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,045 | enrich_references | skos_definition | — | [{"@value":"Pyrrolidine in which the pro-S hydrogen at position 2 is substituted by a carboxylic acid group. L-Proline… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,046 | enrich_references | references | [] | [{"@id":"drugcentral:4125","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['147-85-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17203']; candidate_pubchem_cids=[614, 887, 8988, 12127, 145742, 6971047]; selected_pubchem_cids=[145742]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,008 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | rdkit_pre_consensus from 'C1CC(NC1)C(=O)O'; added: inchi2d_string, monoisotopic_mass |
| 255,143 | chebi_altlabels | altLabel | [] | [{"@value":"(-)-(S)-proline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 17 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,295 | consensus_match | altLabel | [{"@value":"(-)-(S)-proline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"(-)-(S)-proline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=l-proline||dimension=Environmental > media=Ground > geography=Unknown; cas=147-85-3; added Common Chemistry CAS names as altLabel: (<em>S</em>)-(-)-Proline, (<em>S</em>)-Proline, 121: PN: WO2025117649 SEQID: 130 sequence, 125: PN: WO2022170619 SEQID: 478 claimed protein, 129: PN: WO2022171192 SEQID: 478 claimed protein, 2-Pyrrolidinecarboxylic acid, (<em>S</em>)-, 21: PN: WO2021055880 SEQID: 22 claimed protein, 6: PN: WO2024124593 PAGE: 12 claimed protein, <span class="text-smallcaps">L</span>-α-Pyrrolidinecarboxylic acid, Carboxypyrrolidine, MeSH ID: D011392, NSC 46703, Proline, <span class="text-smallcaps">L</span>-; object_uuid=fo-ee3810bffeb21468 |
| 268,296 | consensus_match | cas_match_labels | — | {"147-85-3":"exactMatch"} | group_key=l-proline||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'147-85-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ee3810bffeb21468: {'147-85-3': 'exactMatch'} |
| 275,143 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-proline' |
| 281,640 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | rdkit_post_consensus from 'O=C(O)[C@@H]1CCCN1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,494 | strip_catalogue_altlabels | altLabel | [{"@value":"(-)-(S)-proline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"(-)-(S)-proline","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Removed 1 catalogue altLabel value(s): 'NSC 46703' (registry code) |
| 344,648 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/825bc088-f9ad-… | associations resolved on the elementary layer |
| 389,448 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | typed the way the ontology types it |
| 396,606 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,607 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H9NO2"],… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/6097 | prefLabel | ef:agent/bootstrap_labels | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v0 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v1 |
| ef:activity/change/20260822T0600486828500000/6098 | name | ef:agent/bootstrap_labels | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v1 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v2 |
| ef:activity/change/20260822T0600486828500000/6099 | synonyms | ef:agent/bootstrap_labels | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v2 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v3 |
| ef:activity/change/20260822T0600486828500000/127292 | context | ef:agent/default_context_mapping | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v3 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v4 |
| ef:activity/change/20260822T0600486828500000/127293 | context_iri | ef:agent/default_context_mapping | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v4 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v5 |
| ef:activity/change/20260822T0600486828500000/215377 | unit_iri | ef:agent/unit_normalization | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v5 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v6 |
| ef:activity/change/20260822T0600486828500000/222502 | prefLabel | ef:agent/normalize_name_case | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v6 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v7 |
| ef:activity/change/20260822T0600486828500000/233044 | properties | ef:agent/enrich_references | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v7 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v8 |
| ef:activity/change/20260822T0600486828500000/233045 | skos_definition | ef:agent/enrich_references | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v8 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v9 |
| ef:activity/change/20260822T0600486828500000/233046 | references | ef:agent/enrich_references | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v9 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v10 |
| ef:activity/change/20260822T0600486828500000/250008 | properties | ef:agent/rdkit_pre_consensus | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v10 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v11 |
| ef:activity/change/20260822T0600486828500000/255143 | altLabel | ef:agent/chebi_altlabels | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v11 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v12 |
| ef:activity/change/20260822T0600486828500000/268295 | altLabel | ef:agent/consensus_match | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v12 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v13 |
| ef:activity/change/20260822T0600486828500000/268296 | cas_match_labels | ef:agent/consensus_match | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v13 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v14 |
| ef:activity/change/20260822T0600486828500000/275143 | properties | ef:agent/opsin_iupac | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v14 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v15 |
| ef:activity/change/20260822T0600486828500000/281640 | properties | ef:agent/rdkit_post_consensus | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v15 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v16 |
| ef:activity/change/20260822T0600486828500000/288494 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v16 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v17 |
| ef:activity/change/20260822T0600486828500000/344648 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v17 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v18 |
| ef:activity/change/20260822T0600486828500000/389448 | properties | ef:agent/normalise_property_values | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v18 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v19 |
| ef:activity/change/20260822T0600486828500000/396606 | types | ef:agent/link_flows_to_their_substance | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v19 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v20 |
| ef:activity/change/20260822T0600486828500000/396607 | properties | ef:agent/link_flows_to_their_substance | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v20 | ef:flow/825bc088-f9ad-4045-90bb-dcc8aba25593/v21 |