Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 4 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 2013' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=undec-10-enoicacid||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'112-38-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-de73640ed0403ce2: {'112-38-9': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['112-38-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35045']; candidate_pubchem_cids=[5634, 519180, 5282728]; selected_pubchem_cids=[5634]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

19
# Step Field From To Why
15,225 bootstrap_labels prefLabel [{"@value":"undec-10-enoic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… Bootstrapped prefLabel from legacy name field
15,226 bootstrap_labels name undec-10-enoic acid Purged legacy name field to enforce prefLabel usage
15,227 bootstrap_labels synonyms ["organic","undec-10-enoicacid"] [] Removed legacy synonyms field in favor of structured labels
128,312 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
128,313 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
218,352 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,602 normalize_name_case prefLabel [{"@value":"undec-10-enoic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… [{"@value":"Undec-10-enoic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
241,555 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
241,556 enrich_references skos_definition [{"@value":"An undecenoic acid having its double bond in the 10-position. It is derived from castor oil and is used for… Merged ChEBI/PubChem definitions into skos:definition
241,557 enrich_references references [] [{"@id":"drugcentral:3446","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['112-38-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35045']; candidate_pubchem_cids=[5634, 519180, 5282728]; selected_pubchem_cids=[5634]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
256,402 chebi_altlabels altLabel [] [{"@value":"10-Undecensaeure","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
273,169 consensus_match altLabel [{"@value":"10-Undecensaeure","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"10-Undecensaeure","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… group_key=undec-10-enoicacid||dimension=Environmental > media=Air > indoor=Unknown; cas=112-38-9; added Common Chemistry CAS names as altLabel: Declid, Desenex solution, MeSH ID: D014476, NSC 2013, Renselin, Sevinon, Undecylenic acid, ω-Hendecenoic acid, ω-Undecenoic acid; object_uuid=fo-de73640ed0403ce2
273,170 consensus_match cas_match_labels {"112-38-9":"exactMatch"} group_key=undec-10-enoicacid||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'112-38-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-de73640ed0403ce2: {'112-38-9': 'exactMatch'}
277,653 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Undec-10-enoic Acid'
284,352 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… rdkit_post_consensus from 'C=CCCCCCCCCC(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,360 strip_catalogue_altlabels altLabel [{"@value":"10-Undecensaeure","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"10-Undecensaeure","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Removed 1 catalogue altLabel value(s): 'NSC 2013' (registry code)
345,158 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/840d52e1-8b46-… associations resolved on the elementary layer
392,007 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H20O2"]… typed the way the ontology types it
400,289 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

19 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1302361922970000/15225 prefLabel ef:agent/bootstrap_labels ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v0 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v1
ef:activity/change/20260821T1302361922970000/15226 name ef:agent/bootstrap_labels ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v1 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v2
ef:activity/change/20260821T1302361922970000/15227 synonyms ef:agent/bootstrap_labels ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v2 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v3
ef:activity/change/20260821T1302361922970000/128312 context ef:agent/default_context_mapping ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v3 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v4
ef:activity/change/20260821T1302361922970000/128313 context_iri ef:agent/default_context_mapping ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v4 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v5
ef:activity/change/20260821T1302361922970000/218352 unit_iri ef:agent/unit_normalization ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v5 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v6
ef:activity/change/20260821T1302361922970000/224602 prefLabel ef:agent/normalize_name_case ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v6 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v7
ef:activity/change/20260821T1302361922970000/241555 properties ef:agent/enrich_references ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v7 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v8
ef:activity/change/20260821T1302361922970000/241556 skos_definition ef:agent/enrich_references ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v8 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v9
ef:activity/change/20260821T1302361922970000/241557 references ef:agent/enrich_references ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v9 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v10
ef:activity/change/20260821T1302361922970000/256402 altLabel ef:agent/chebi_altlabels ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v10 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v11
ef:activity/change/20260821T1302361922970000/273169 altLabel ef:agent/consensus_match ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v11 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v12
ef:activity/change/20260821T1302361922970000/273170 cas_match_labels ef:agent/consensus_match ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v12 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v13
ef:activity/change/20260821T1302361922970000/277653 properties ef:agent/opsin_iupac ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v13 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v14
ef:activity/change/20260821T1302361922970000/284352 properties ef:agent/rdkit_post_consensus ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v14 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v15
ef:activity/change/20260821T1302361922970000/290360 altLabel ef:agent/strip_catalogue_altlabels ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v15 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v16
ef:activity/change/20260821T1302361922970000/345158 concept_associations ef:agent/carry_associations_onto_flows ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v16 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v17
ef:activity/change/20260821T1302361922970000/392007 properties ef:agent/normalise_property_values ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v17 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v18
ef:activity/change/20260821T1302361922970000/400289 types ef:agent/link_flows_to_their_substance ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v18 ef:flow/840d52e1-8b46-4ac7-851b-2dadd841374e/v19

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