Consensus flow list

By field

16 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 2 chebi_altlabels, consensus_match group_key=bromomethane||dimension=Environmental > media=Water > water_body=Surface water; cas=74-83-9; added Common Chemistry CAS names as altLabel: 1-Bromomethane, Brom-O-Gas, Curafume, F 40B1, Halon 1001, Haltox, Iscobrome, Methane, bromo-, Methybrom, R 40B1, Terabol; object_uuid=fo-10b4ae10d418f62f
cas_match_labels 1 consensus_match group_key=bromomethane||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-83-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-10b4ae10d418f62f: {'74-83-9': 'exactMatch'}
cas_number_sources 1 registry_number_from_name Attach provenance for the registry number its name gave it
cas_numbers 1 registry_number_from_name Registry number from the flow's own name: another row of this source list gives this name
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 200-813-2 from CAS 74-83-9
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['74-83-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39275']; candidate_pubchem_cids=[6323, 577392]; selected_pubchem_cids=[6323]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
4,943 bootstrap_labels prefLabel [{"@value":"Bromomethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
4,944 bootstrap_labels name Bromomethane Purged legacy name field to enforce prefLabel usage
128,810 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
128,811 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
214,996 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,712 registry_number_from_name cas_numbers [] ["74-83-9"] Registry number from the flow's own name: another row of this source list gives this name
226,713 registry_number_from_name cas_number_sources {"74-83-9":{"prov:wasGeneratedBy":"registry_number_from_name","prov:wasAttributedTo":"consensus-flow-list","prov:hadPri… Attach provenance for the registry number its name gave it
226,778 ec_cross_check ec_numbers [] ["200-813-2"] Resolved from EC-inventory: 200-813-2 from CAS 74-83-9
231,938 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
231,939 enrich_references skos_definition [{"@value":"A one-carbon compound in which the carbon is attached by single bonds to three hydrogen atoms and one bromi… Merged ChEBI/PubChem definitions into skos:definition
231,940 enrich_references references [] [{"@id":"foodb.food:FDB008126","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedT… Added references with provenance; cas_numbers=['74-83-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39275']; candidate_pubchem_cids=[6323, 577392]; selected_pubchem_cids=[6323]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,689 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… rdkit_pre_consensus from 'CBr'; added: monoisotopic_mass
255,015 chebi_altlabels altLabel [{"@value":"Methyl bromide","@language":"en","source":{"prov:wasGeneratedBy":"manual_fixes","prov:wasAttributedTo":"con… [{"@value":"Methyl bromide","@language":"en","source":{"prov:wasGeneratedBy":"manual_fixes","prov:wasAttributedTo":"con… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,483 consensus_match altLabel [{"@value":"Methyl bromide","@language":"en","source":{"prov:wasGeneratedBy":"manual_fixes","prov:wasAttributedTo":"con… [{"@value":"Methyl bromide","@language":"en","source":{"prov:wasGeneratedBy":"manual_fixes","prov:wasAttributedTo":"con… group_key=bromomethane||dimension=Environmental > media=Water > water_body=Surface water; cas=74-83-9; added Common Chemistry CAS names as altLabel: 1-Bromomethane, Brom-O-Gas, Curafume, F 40B1, Halon 1001, Haltox, Iscobrome, Methane, bromo-, Methybrom, R 40B1, Terabol; object_uuid=fo-10b4ae10d418f62f
264,486 consensus_match cas_match_labels {"74-83-9":"exactMatch"} group_key=bromomethane||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-83-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-10b4ae10d418f62f: {'74-83-9': 'exactMatch'}
274,839 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Bromomethane'
281,306 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… rdkit_post_consensus from 'CBr'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
345,426 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/84deb48b-25ec-… associations resolved on the elementary layer
389,144 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3Br"],"a… typed the way the ontology types it
396,166 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
396,167 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24852","rdfs:label":"insecticide","http://www.w3.org/2004/02/skos/core#de… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/4943 prefLabel ef:agent/bootstrap_labels ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v0 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v1
ef:activity/change/20260820T0738569779880000/4944 name ef:agent/bootstrap_labels ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v1 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v2
ef:activity/change/20260820T0738569779880000/128810 context ef:agent/default_context_mapping ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v2 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v3
ef:activity/change/20260820T0738569779880000/128811 context_iri ef:agent/default_context_mapping ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v3 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v4
ef:activity/change/20260820T0738569779880000/214996 unit_iri ef:agent/unit_normalization ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v4 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v5
ef:activity/change/20260820T0738569779880000/226712 cas_numbers ef:agent/registry_number_from_name ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v5 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v6
ef:activity/change/20260820T0738569779880000/226713 cas_number_sources ef:agent/registry_number_from_name ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v6 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v7
ef:activity/change/20260820T0738569779880000/226778 ec_numbers ef:agent/ec_cross_check ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v7 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v8
ef:activity/change/20260820T0738569779880000/231938 properties ef:agent/enrich_references ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v8 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v9
ef:activity/change/20260820T0738569779880000/231939 skos_definition ef:agent/enrich_references ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v9 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v10
ef:activity/change/20260820T0738569779880000/231940 references ef:agent/enrich_references ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v10 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v11
ef:activity/change/20260820T0738569779880000/249689 properties ef:agent/rdkit_pre_consensus ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v11 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v12
ef:activity/change/20260820T0738569779880000/255015 altLabel ef:agent/chebi_altlabels ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v12 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v13
ef:activity/change/20260820T0738569779880000/264483 altLabel ef:agent/consensus_match ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v13 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v14
ef:activity/change/20260820T0738569779880000/264486 cas_match_labels ef:agent/consensus_match ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v14 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v15
ef:activity/change/20260820T0738569779880000/274839 properties ef:agent/opsin_iupac ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v15 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v16
ef:activity/change/20260820T0738569779880000/281306 properties ef:agent/rdkit_post_consensus ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v16 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v17
ef:activity/change/20260820T0738569779880000/345426 concept_associations ef:agent/carry_associations_onto_flows ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v17 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v18
ef:activity/change/20260820T0738569779880000/389144 properties ef:agent/normalise_property_values ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v18 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v19
ef:activity/change/20260820T0738569779880000/396166 types ef:agent/link_flows_to_their_substance ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v19 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v20
ef:activity/change/20260820T0738569779880000/396167 roles ef:agent/link_flows_to_their_substance ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v20 ef:flow/84deb48b-25ec-4647-8936-e7477cc73b77/v21

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