5-fluorouracil
Everything that changed this flow. Back to the flow
85d5a0c1-4213-445a-b183-5192d8eb4213
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'NSC 19893' (registry code), 'Sigma 03738' (trade name), 'U 8953' (grade code) |
| cas_match_labels | 1 | consensus_match | group_key=5-fluorouracil||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'51-21-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d1f39299a271e286: {'51-21-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['51-21-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_46345']; candidate_pubchem_cids=[3385, 121997, 492456]; selected_pubchem_cids=[3385]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 8,939 | bootstrap_labels | prefLabel | — | [{"@value":"5-fluorouracil","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 8,940 | bootstrap_labels | name | 5-fluorouracil | — | Purged legacy name field to enforce prefLabel usage |
| 24,034 | bootstrap_labels | synonyms | ["fluorouracil","5-fluoropyrimidine-2,4(1h,3h)-dione","2,4(1h,3h)-pyrimidinedione, 5-fluoro-","2,4(1h,3h)-pyrimidinedio… | [] | Removed legacy synonyms field in favor of structured labels |
| 129,408 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 129,409 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 216,314 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 235,734 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 235,735 | enrich_references | skos_definition | — | [{"@value":"A nucleobase analogue that is uracil in which the hydrogen at position 5 is replaced by fluorine. It is an… | Merged ChEBI/PubChem definitions into skos:definition |
| 235,736 | enrich_references | references | [] | [{"@id":"beilstein:127172","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['51-21-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_46345']; candidate_pubchem_cids=[3385, 121997, 492456]; selected_pubchem_cids=[3385]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,771 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | rdkit_pre_consensus from 'C1=C(C(=O)NC(=O)N1)F'; added: monoisotopic_mass |
| 255,667 | chebi_altlabels | altLabel | [] | [{"@value":"5-FU","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,086 | consensus_match | altLabel | [{"@value":"5-FU","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"5-FU","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=5-fluorouracil||dimension=Environmental > media=Air > strata=Unknown; cas=51-21-8; added Common Chemistry CAS names as altLabel: 2,4(1<em>H</em>,3<em>H</em>)-Pyrimidinedione, 5-fluoro-, 2,4-Dihydroxy-5-fluoropyrimidine, 2,4-Dioxo-5-fluoropyrimidine, 5-Fluoracyl, 5-Fluoro-1<em>H</em>-pyrimidine-2,4-dione, 5-Fluoro-2,4(1<em>H</em>,3<em>H</em>)-pyrimidinedione, 5-Fluoro-2,4-dihydroxypyrimidine, 5-Fluoro-2,4-pyrimidinedione, 5-Fluoropyrimidine-2,4-diol, 5-Oncouracil, Adrucil, Arumel, Carac, Carzonal, DBL, Efudex, Efudix, Efurix, FU, Fluoroblastin, Fluoroplex, Fluorouracile Accord, Flurablastin, Fluracedyl, Fluracil, Fluracilum, Fluri, Fluril, Ftoruracil, Kecimeton, MeSH ID: D005472, NSC 19893, Phthoruracil, Phtoruracil, Queroplex, Ro 2-9757, Sigma 03738, Timazin, U 8953, Ulup, Uracil, 5-fluoro-; object_uuid=fo-d1f39299a271e286 |
| 263,087 | consensus_match | cas_match_labels | — | {"51-21-8":"exactMatch"} | group_key=5-fluorouracil||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'51-21-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d1f39299a271e286: {'51-21-8': 'exactMatch'} |
| 275,953 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-fluorouracil' |
| 282,522 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | rdkit_post_consensus from 'O=c1[nH]cc(F)c(=O)[nH]1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,126 | strip_catalogue_altlabels | altLabel | [{"@value":"5-FU","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"5-FU","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Removed 3 catalogue altLabel value(s): 'NSC 19893' (registry code), 'Sigma 03738' (trade name), 'U 8953' (grade code) |
| 345,705 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/85d5a0c1-4213-… | associations resolved on the elementary layer |
| 390,301 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H3FN2O2"… | typed the way the ontology types it |
| 397,858 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 397,859 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/8939 | prefLabel | ef:agent/bootstrap_labels | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v0 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v1 |
| ef:activity/change/20260821T1554374006150000/8940 | name | ef:agent/bootstrap_labels | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v1 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v2 |
| ef:activity/change/20260821T1554374006150000/24034 | synonyms | ef:agent/bootstrap_labels | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v2 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v3 |
| ef:activity/change/20260821T1554374006150000/129408 | context | ef:agent/default_context_mapping | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v3 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v4 |
| ef:activity/change/20260821T1554374006150000/129409 | context_iri | ef:agent/default_context_mapping | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v4 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v5 |
| ef:activity/change/20260821T1554374006150000/216314 | unit_iri | ef:agent/unit_normalization | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v5 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v6 |
| ef:activity/change/20260821T1554374006150000/235734 | properties | ef:agent/enrich_references | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v6 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v7 |
| ef:activity/change/20260821T1554374006150000/235735 | skos_definition | ef:agent/enrich_references | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v7 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v8 |
| ef:activity/change/20260821T1554374006150000/235736 | references | ef:agent/enrich_references | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v8 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v9 |
| ef:activity/change/20260821T1554374006150000/250771 | properties | ef:agent/rdkit_pre_consensus | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v9 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v10 |
| ef:activity/change/20260821T1554374006150000/255667 | altLabel | ef:agent/chebi_altlabels | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v10 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v11 |
| ef:activity/change/20260821T1554374006150000/263086 | altLabel | ef:agent/consensus_match | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v11 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v12 |
| ef:activity/change/20260821T1554374006150000/263087 | cas_match_labels | ef:agent/consensus_match | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v12 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v13 |
| ef:activity/change/20260821T1554374006150000/275953 | properties | ef:agent/opsin_iupac | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v13 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v14 |
| ef:activity/change/20260821T1554374006150000/282522 | properties | ef:agent/rdkit_post_consensus | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v14 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v15 |
| ef:activity/change/20260821T1554374006150000/289126 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v15 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v16 |
| ef:activity/change/20260821T1554374006150000/345705 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v16 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v17 |
| ef:activity/change/20260821T1554374006150000/390301 | properties | ef:agent/normalise_property_values | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v17 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v18 |
| ef:activity/change/20260821T1554374006150000/397858 | types | ef:agent/link_flows_to_their_substance | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v18 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v19 |
| ef:activity/change/20260821T1554374006150000/397859 | roles | ef:agent/link_flows_to_their_substance | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v19 | ef:flow/85d5a0c1-4213-445a-b183-5192d8eb4213/v20 |