Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'NSC 147791' (registry code), 'NSC 15203' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=nitricacid||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7697-37-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-091ee609e440c714: {'7697-37-2': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7697-37-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48107']; candidate_pubchem_cids=[943, 944, 946]; selected_pubchem_cids=[944]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
17,420 bootstrap_labels prefLabel [{"@value":"nitric acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Bootstrapped prefLabel from legacy name field
17,421 bootstrap_labels name nitric acid Purged legacy name field to enforce prefLabel usage
17,422 bootstrap_labels synonyms ["inorganic","nitricacid","nitricacid...%","acid,nitric","acidonitrico","acidumnitricum","aquafortis","azoticacid","con… [] Removed legacy synonyms field in favor of structured labels
130,866 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
130,867 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
219,050 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,081 normalize_name_case prefLabel [{"@value":"nitric acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… [{"@value":"Nitric Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
243,515 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
243,516 enrich_references skos_definition [{"@value":"A nitrogen oxoacid of formula HNO3 in which the nitrogen atom is bonded to a hydroxy group and by equivalen… Merged ChEBI/PubChem definitions into skos:definition
243,517 enrich_references references [] [{"@id":"gmelin:1576","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['7697-37-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48107']; candidate_pubchem_cids=[943, 944, 946]; selected_pubchem_cids=[944]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,024 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… rdkit_pre_consensus from 'O=[N+]([O-])O'; added: monoisotopic_mass
256,668 chebi_altlabels altLabel [] [{"@value":"HNO3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
269,882 consensus_match altLabel [{"@value":"HNO3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"HNO3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=nitricacid||dimension=Environmental > media=Air > strata=Unknown; cas=7697-37-2; added Common Chemistry CAS names as altLabel: Aqua fortis, Fumic acid, Hydrogen nitrate (H(NO<sub>3</sub>)), MeSH ID: D017942, NSC 147791, NSC 15203, Nital, Nitric acid (HONO<sub>2</sub>), Nitryl hydroxide; object_uuid=fo-091ee609e440c714
269,883 consensus_match cas_match_labels {"7697-37-2":"exactMatch"} group_key=nitricacid||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7697-37-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-091ee609e440c714: {'7697-37-2': 'exactMatch'}
278,226 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Nitric Acid'
284,971 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… rdkit_post_consensus from 'O=[N+]([O-])O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,778 strip_catalogue_altlabels altLabel [{"@value":"HNO3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"HNO3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Removed 2 catalogue altLabel value(s): 'NSC 147791' (registry code), 'NSC 15203' (registry code)
346,433 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/88705894-e5eb-… associations resolved on the elementary layer
392,580 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["HNO3"],"at… typed the way the ontology types it
401,125 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/17420 prefLabel ef:agent/bootstrap_labels ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v0 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v1
ef:activity/change/20260822T0600486828500000/17421 name ef:agent/bootstrap_labels ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v1 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v2
ef:activity/change/20260822T0600486828500000/17422 synonyms ef:agent/bootstrap_labels ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v2 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v3
ef:activity/change/20260822T0600486828500000/130866 context ef:agent/default_context_mapping ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v3 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v4
ef:activity/change/20260822T0600486828500000/130867 context_iri ef:agent/default_context_mapping ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v4 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v5
ef:activity/change/20260822T0600486828500000/219050 unit_iri ef:agent/unit_normalization ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v5 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v6
ef:activity/change/20260822T0600486828500000/225081 prefLabel ef:agent/normalize_name_case ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v6 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v7
ef:activity/change/20260822T0600486828500000/243515 properties ef:agent/enrich_references ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v7 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v8
ef:activity/change/20260822T0600486828500000/243516 skos_definition ef:agent/enrich_references ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v8 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v9
ef:activity/change/20260822T0600486828500000/243517 references ef:agent/enrich_references ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v9 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v10
ef:activity/change/20260822T0600486828500000/253024 properties ef:agent/rdkit_pre_consensus ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v10 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v11
ef:activity/change/20260822T0600486828500000/256668 altLabel ef:agent/chebi_altlabels ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v11 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v12
ef:activity/change/20260822T0600486828500000/269882 altLabel ef:agent/consensus_match ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v12 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v13
ef:activity/change/20260822T0600486828500000/269883 cas_match_labels ef:agent/consensus_match ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v13 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v14
ef:activity/change/20260822T0600486828500000/278226 properties ef:agent/opsin_iupac ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v14 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v15
ef:activity/change/20260822T0600486828500000/284971 properties ef:agent/rdkit_post_consensus ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v15 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v16
ef:activity/change/20260822T0600486828500000/290778 altLabel ef:agent/strip_catalogue_altlabels ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v16 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v17
ef:activity/change/20260822T0600486828500000/346433 concept_associations ef:agent/carry_associations_onto_flows ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v17 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v18
ef:activity/change/20260822T0600486828500000/392580 properties ef:agent/normalise_property_values ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v18 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v19
ef:activity/change/20260822T0600486828500000/401125 types ef:agent/link_flows_to_their_substance ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v19 ef:flow/88705894-e5eb-4216-9b5f-c124d436fbf6/v20

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