Ursodeoxycholic Acid
Everything that changed this flow. Back to the flow
8bafda6b-c9f5-4cef-b635-53b4daae9fa0
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 683769' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=ursodeoxycholicacid||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'128-13-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-59f284e0b6e2136f: {'128-13-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['128-13-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9907']; candidate_pubchem_cids=[5645, 31401, 166714, 387316, 388708, 465690, 3037037, 6850914, 7067170, 11516715, 12306688, 13505246, 44135443, 44754955, 53399161, 126672054, 126963504, 138107681, 138115001, 177678873]; selected_pubchem_cids=[31401]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 16,436 | bootstrap_labels | prefLabel | — | [{"@value":"ursodeoxycholic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… | Bootstrapped prefLabel from legacy name field |
| 16,437 | bootstrap_labels | name | ursodeoxycholic acid | — | Purged legacy name field to enforce prefLabel usage |
| 16,438 | bootstrap_labels | synonyms | ["ursodeoxycholicacid","(3î±,5î²,7î²)-3,7-dihydroxycholan-24-oicacid","(4r)-4-[(1s,2s,5r,7s,9s,10r,11s,14r,15r)-5,9-dih… | [] | Removed legacy synonyms field in favor of structured labels |
| 132,886 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 132,887 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 218,735 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,864 | normalize_name_case | prefLabel | [{"@value":"ursodeoxycholic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… | [{"@value":"Ursodeoxycholic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 242,638 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 242,639 | enrich_references | skos_definition | — | [{"@value":"A bile acid found in the bile of bears (Ursidae) as a conjugate with taurine. Used therapeutically, it prev… | Merged ChEBI/PubChem definitions into skos:definition |
| 242,640 | enrich_references | references | [] | [{"@id":"drugcentral:2797","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['128-13-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9907']; candidate_pubchem_cids=[5645, 31401, 166714, 387316, 388708, 465690, 3037037, 6850914, 7067170, 11516715, 12306688, 13505246, 44135443, 44754955, 53399161, 126672054, 126963504, 138107681, 138115001, 177678873]; selected_pubchem_cids=[31401]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,773 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | rdkit_pre_consensus from 'CC(CCC(=O)O)C1CCC2C1(CCC3C2C(CC4C3(CCC(C4)O)C)O)C'; added: inchi2d_string |
| 256,553 | chebi_altlabels | altLabel | [] | [{"@value":"(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"che… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,203 | consensus_match | altLabel | [{"@value":"(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"che… | [{"@value":"(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"che… | group_key=ursodeoxycholicacid||dimension=Environmental > media=Water > water_body=Unknown; cas=128-13-2; added Common Chemistry CAS names as altLabel: (3α,5β,7β)-3,7-Dihydroxycholan-24-oic acid, 17β-(1-Methyl-3-carboxypropyl)etiocholane-3α,7β-diol, 3α,7β-Dihydroxy-5β-cholan-24-oate, 3α,7β-Dihydroxy-5β-cholan-24-oic acid, 3α,7β-Dihydroxy-5β-cholanic acid, 3α,7β-Dihydroxy-5β-cholanoic acid, 3α,7β-Dihydroxycholanic acid, 5β-Cholan-24-oic acid, 3α,7β-dihydroxy-, 5β-Cholanic acid, 3α,7β-dihydroxy-, 7β-Hydroxylithocholic acid, Adursal, Arsacol, Cholan-24-oic acid, 3,7-dihydroxy-, (3α,5β,7β)-, Cholit-Ursan, Delursan, Desocol, Desol, Destolit, Deursil, Litursol, Lyeton, MeSH ID: D014580, NSC 683769, Paptarom, Solutrat, UDCA, Urdes, Urosiol, Ursacol, Ursic acid, Urso, Ursobilin, Ursochol, Ursocholic acid, deoxy-, Ursocol, Ursodamor, Ursodesoxycholic acid, Ursofalk, Ursogall, Ursolvan, Ursosan; object_uuid=fo-59f284e0b6e2136f |
| 273,204 | consensus_match | cas_match_labels | — | {"128-13-2":"exactMatch"} | group_key=ursodeoxycholicacid||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'128-13-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-59f284e0b6e2136f: {'128-13-2': 'exactMatch'} |
| 277,977 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid' |
| 284,701 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | rdkit_post_consensus from 'C[C@H](CCC(=O)O)[C@H]1CC[C@H]2[C@@H]3[C@@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@]12C'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,589 | strip_catalogue_altlabels | altLabel | [{"@value":"(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"che… | [{"@value":"(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"che… | Removed 1 catalogue altLabel value(s): 'NSC 683769' (registry code) |
| 347,438 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/8bafda6b-c9f5-… | associations resolved on the elementary layer |
| 392,331 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | typed the way the ontology types it |
| 400,745 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 400,746 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O4"]… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/16436 | prefLabel | ef:agent/bootstrap_labels | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v0 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v1 |
| ef:activity/change/20260821T1554374006150000/16437 | name | ef:agent/bootstrap_labels | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v1 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v2 |
| ef:activity/change/20260821T1554374006150000/16438 | synonyms | ef:agent/bootstrap_labels | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v2 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v3 |
| ef:activity/change/20260821T1554374006150000/132886 | context | ef:agent/default_context_mapping | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v3 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v4 |
| ef:activity/change/20260821T1554374006150000/132887 | context_iri | ef:agent/default_context_mapping | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v4 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v5 |
| ef:activity/change/20260821T1554374006150000/218735 | unit_iri | ef:agent/unit_normalization | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v5 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v6 |
| ef:activity/change/20260821T1554374006150000/224864 | prefLabel | ef:agent/normalize_name_case | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v6 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v7 |
| ef:activity/change/20260821T1554374006150000/242638 | properties | ef:agent/enrich_references | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v7 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v8 |
| ef:activity/change/20260821T1554374006150000/242639 | skos_definition | ef:agent/enrich_references | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v8 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v9 |
| ef:activity/change/20260821T1554374006150000/242640 | references | ef:agent/enrich_references | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v9 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v10 |
| ef:activity/change/20260821T1554374006150000/252773 | properties | ef:agent/rdkit_pre_consensus | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v10 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v11 |
| ef:activity/change/20260821T1554374006150000/256553 | altLabel | ef:agent/chebi_altlabels | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v11 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v12 |
| ef:activity/change/20260821T1554374006150000/273203 | altLabel | ef:agent/consensus_match | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v12 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v13 |
| ef:activity/change/20260821T1554374006150000/273204 | cas_match_labels | ef:agent/consensus_match | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v13 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v14 |
| ef:activity/change/20260821T1554374006150000/277977 | properties | ef:agent/opsin_iupac | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v14 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v15 |
| ef:activity/change/20260821T1554374006150000/284701 | properties | ef:agent/rdkit_post_consensus | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v15 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v16 |
| ef:activity/change/20260821T1554374006150000/290589 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v16 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v17 |
| ef:activity/change/20260821T1554374006150000/347438 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v17 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v18 |
| ef:activity/change/20260821T1554374006150000/392331 | properties | ef:agent/normalise_property_values | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v18 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v19 |
| ef:activity/change/20260821T1554374006150000/400745 | types | ef:agent/link_flows_to_their_substance | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v19 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v20 |
| ef:activity/change/20260821T1554374006150000/400746 | properties | ef:agent/link_flows_to_their_substance | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v20 | ef:flow/8bafda6b-c9f5-4cef-b635-53b4daae9fa0/v21 |