Morphine
Everything that changed this flow. Back to the flow
8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=morphine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-27-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-08bb1e2e49826e26: {'57-27-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['57-27-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17303']; candidate_pubchem_cids=[4253, 231388, 5288826, 5479215, 11969702, 23253564, 126968565]; selected_pubchem_cids=[5288826]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,595 | bootstrap_labels | prefLabel | — | [{"@value":"morphine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 4,596 | bootstrap_labels | name | morphine | — | Purged legacy name field to enforce prefLabel usage |
| 4,597 | bootstrap_labels | synonyms | ["organic"] | [] | Removed legacy synonyms field in favor of structured labels |
| 135,116 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 135,117 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 214,874 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,147 | normalize_name_case | prefLabel | [{"@value":"morphine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Morphine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,596 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,597 | enrich_references | skos_definition | — | [{"@value":"A morphinane alkaloid that is a highly potent opiate analgesic psychoactive drug. Morphine acts directly on… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,598 | enrich_references | references | [] | [{"@id":"drugcentral:1845","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['57-27-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17303']; candidate_pubchem_cids=[4253, 231388, 5288826, 5479215, 11969702, 23253564, 126968565]; selected_pubchem_cids=[5288826]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,585 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | rdkit_pre_consensus from 'CN1CCC23C4C1CC5=C2C(=C(C=C5)O)OC3C(C=C4)O'; added: inchi2d_string, monoisotopic_mass |
| 254,955 | chebi_altlabels | altLabel | [] | [{"@value":"(-)-morphine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 269,063 | consensus_match | altLabel | [{"@value":"(-)-morphine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | [{"@value":"(-)-morphine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | group_key=morphine||dimension=Environmental > media=Air > indoor=Unknown; cas=57-27-2; added Common Chemistry CAS names as altLabel: (5α,6α)-7,8-Didehydro-4,5-epoxy-17-methylmorphinan-3,6-diol, 10-Hydroxymorphine, <em>l</em>-Morphine, Aguettant, DepoDur, Dimorf, Dinamorf, Dulcontin, Duromorph, M-Eslon, MS Contin, MeSH ID: D009020, Meconium, Morphina, Morphinan-3,6-diol, 7,8-didehydro-4,5-epoxy-17-methyl- (5α,6α)-, Morphinan-3,6α-diol, 7,8-didehydro-4,5α-epoxy-17-methyl-, Morphinism, Nepenthe, Ospalivina, Sevredol, Statex SR; object_uuid=fo-08bb1e2e49826e26 |
| 269,064 | consensus_match | cas_match_labels | — | {"57-27-2":"exactMatch"} | group_key=morphine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-27-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-08bb1e2e49826e26: {'57-27-2': 'exactMatch'} |
| 274,718 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Morphine' |
| 281,181 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | rdkit_post_consensus from 'CN1CC[C@]23c4c5ccc(O)c4O[C@H]2[C@@H](O)C=C[C@H]3[C@H]1C5'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,212 | dedupe_altlabels | altLabel | [{"@value":"(-)-morphine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | [{"@value":"(-)-morphine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | Deduplicated altLabel values and removed entries matching prefLabel |
| 348,554 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/8f95df87-81d3-… | associations resolved on the elementary layer |
| 389,025 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | typed the way the ontology types it |
| 396,004 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,005 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
| 396,006 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19NO3"… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/4595 | prefLabel | ef:agent/bootstrap_labels | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v0 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v1 |
| ef:activity/change/20260822T0600486828500000/4596 | name | ef:agent/bootstrap_labels | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v1 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v2 |
| ef:activity/change/20260822T0600486828500000/4597 | synonyms | ef:agent/bootstrap_labels | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v2 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v3 |
| ef:activity/change/20260822T0600486828500000/135116 | context | ef:agent/default_context_mapping | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v3 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v4 |
| ef:activity/change/20260822T0600486828500000/135117 | context_iri | ef:agent/default_context_mapping | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v4 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v5 |
| ef:activity/change/20260822T0600486828500000/214874 | unit_iri | ef:agent/unit_normalization | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v5 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v6 |
| ef:activity/change/20260822T0600486828500000/222147 | prefLabel | ef:agent/normalize_name_case | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v6 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v7 |
| ef:activity/change/20260822T0600486828500000/231596 | properties | ef:agent/enrich_references | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v7 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v8 |
| ef:activity/change/20260822T0600486828500000/231597 | skos_definition | ef:agent/enrich_references | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v8 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v9 |
| ef:activity/change/20260822T0600486828500000/231598 | references | ef:agent/enrich_references | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v9 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v10 |
| ef:activity/change/20260822T0600486828500000/249585 | properties | ef:agent/rdkit_pre_consensus | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v10 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v11 |
| ef:activity/change/20260822T0600486828500000/254955 | altLabel | ef:agent/chebi_altlabels | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v11 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v12 |
| ef:activity/change/20260822T0600486828500000/269063 | altLabel | ef:agent/consensus_match | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v12 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v13 |
| ef:activity/change/20260822T0600486828500000/269064 | cas_match_labels | ef:agent/consensus_match | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v13 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v14 |
| ef:activity/change/20260822T0600486828500000/274718 | properties | ef:agent/opsin_iupac | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v14 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v15 |
| ef:activity/change/20260822T0600486828500000/281181 | properties | ef:agent/rdkit_post_consensus | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v15 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v16 |
| ef:activity/change/20260822T0600486828500000/292212 | altLabel | ef:agent/dedupe_altlabels | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v16 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v17 |
| ef:activity/change/20260822T0600486828500000/348554 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v17 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v18 |
| ef:activity/change/20260822T0600486828500000/389025 | properties | ef:agent/normalise_property_values | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v18 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v19 |
| ef:activity/change/20260822T0600486828500000/396004 | types | ef:agent/link_flows_to_their_substance | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v19 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v20 |
| ef:activity/change/20260822T0600486828500000/396005 | roles | ef:agent/link_flows_to_their_substance | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v20 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v21 |
| ef:activity/change/20260822T0600486828500000/396006 | properties | ef:agent/link_flows_to_their_substance | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v21 | ef:flow/8f95df87-81d3-4f1a-bd9b-4c2bf1ff47bf/v22 |